- added connection property
- simplified main()

- put small database server creation in README

- protected (quote) database assertions
- added initDatabase, resetDatabase and first updateDatabase
- rewrote all sql statements in uppercase
- added version attribute and stored in database
- added log in the database of the server and check it before reset
- added copyright notice for the RTSI snippet and JWhich

- Suppressed some 1.5 warnings
- Added a -S argument to AlignmentService and took the host argument into account

- corrected CacheImpl loading from database bug on filenames

- Many small improvements of the AlignementServer
- Complete reengineering of the API for version 3.0

- some detail modification