Upgraded to mysql 5.1.36 and postgres 9.4-1204 (lib)
Upgraded to Jetty 9.3.3 (lib)
Upgraded OntoSim to pre-2.5 (lib)

Upgraded xercesImpl to 2.11.0, mysql to 5.1.28, postgres to 9.3-1100, Jena to 2.9.0, OWL API to 3.4.8, HermiT to 1.3.8