- Added new tests

README.TXT

@@ -38,6 +38,12 @@ Building:
 ---------
 
 $ ant jar
+(or ant compileall; ant jar)
+
+Testing
+-------
+
+$ ant test
 
 Running:
 --------

test/src/JWNLTest.java

+/*
+ * $Id$
+ *
+ * Copyright (C) INRIA Rhne-Alpes, 2008
+ *
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation; either version 2.1 of the License, or
+ * (at your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307 USA
+ */
+
+//package test.com.acme.dona.dep;
+
+import static org.testng.Assert.assertEquals;
+import static org.testng.Assert.assertNotNull;
+import static org.testng.Assert.assertNull;
+import static org.testng.Assert.assertTrue;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Configuration;
+import org.testng.annotations.Test;
+//import org.testng.annotations.*;
+
+import org.semanticweb.owl.align.AlignmentVisitor;
+import org.semanticweb.owl.align.AlignmentException;
+import org.semanticweb.owl.align.Alignment;
+import org.semanticweb.owl.align.AlignmentProcess;
+import org.semanticweb.owl.align.Parameters;
+
+import fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor;
+import fr.inrialpes.exmo.align.impl.BasicParameters;
+import fr.inrialpes.exmo.align.ling.JWNLAlignment;
+
+import java.io.ByteArrayOutputStream;
+import java.io.PrintWriter;
+import java.io.BufferedWriter;
+import java.io.OutputStreamWriter;
+import java.net.URI;
+import java.net.URISyntaxException;
+
+/**
+ * These tests corresponds to the JWNL test of the README file in the main directory
+ */
+
+public class JWNLTest {
+
+    private AlignmentProcess alignment = null;
+
+    @Test(groups = { "full", "ling" })
+    public void routineJWNLTest() throws Exception {
+    /*
+$ setenv WNDIR 
+$ java -jar lib/alignwn.jar -D=$WNDIR file://$CWD/examples/rdf/ file://$CWD/examples/rdf/ -i fr.inrialpes.exmo.align.ling.JWNLAlignment -o examples/rdf/JWNL.rdf
+    */
+	Parameters params = new BasicParameters();
+    //System.getenv("WNDIR");
+	params.setParameter( "wndict", "../WordNet-2.0/dict" );
+	alignment = new JWNLAlignment();
+	assertNotNull( alignment, "ObjectAlignment should not be null" );
+	assertEquals( alignment.nbCells(), 0 );
+	alignment.init( new URI("file:examples/rdf/edu.umbc.ebiquity.publication.owl"), new URI("file:examples/rdf/edu.mit.visus.bibtex.owl"));
+	alignment.align( (Alignment)null, params );
+	assertEquals( alignment.nbCells(), 43 );
+	ByteArrayOutputStream stream = new ByteArrayOutputStream(); 
+	//FileOutputStream stream = new FileOutputStream("result.rdf");
+	PrintWriter writer = new PrintWriter (
+			  new BufferedWriter(
+			       new OutputStreamWriter( stream, "UTF-8" )), true);
+	AlignmentVisitor renderer = new RDFRendererVisitor( writer );
+	alignment.render( renderer );
+	writer.flush();
+	writer.close();
+	assertEquals( stream.toString().length(), 14037, "Rendered differently" );
+	alignment.cut( "hard", 0.4 );
+	assertEquals( alignment.nbCells(), 35 );
+    }
+}

test/src/OMWGTest.java

+/*
+ * $Id$
+ *
+ * Copyright (C) INRIA Rhne-Alpes, 2008
+ *
+ * This program is free software; you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation; either version 2.1 of the License, or
+ * (at your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307 USA
+ */
+
+//package test.com.acme.dona.dep;
+
+import static org.testng.Assert.assertEquals;
+import static org.testng.Assert.assertNotNull;
+import static org.testng.Assert.assertNull;
+import static org.testng.Assert.assertTrue;
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Configuration;
+import org.testng.annotations.Test;
+//import org.testng.annotations.*;
+
+import org.semanticweb.owl.align.AlignmentVisitor;
+import org.semanticweb.owl.align.AlignmentException;
+import org.semanticweb.owl.align.Alignment;
+
+import fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor;
+import fr.inrialpes.exmo.align.parser.AlignmentParser;
+
+import java.io.ByteArrayOutputStream;
+import java.io.PrintWriter;
+import java.io.BufferedWriter;
+import java.io.OutputStreamWriter;
+import java.io.FileOutputStream;
+
+/**
+ * These tests corresponds to the tests presented in the examples/omwg directory
+ */
+
+public class OMWGTest {
+
+    private Alignment alignment = null;
+    private AlignmentParser aparser1 = null;
+
+    @Test(groups = { "full", "omwg" })
+    public void loadPrintTest() throws Exception {
+	/*
+java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter wine.xml > wine2.xml
+	*/
+	aparser1 = new AlignmentParser( 0 );
+	assertNotNull( aparser1 );
+	alignment = aparser1.parse( "examples/omwg/wine.xml" );
+	assertNotNull( alignment );
+	//assertTrue( alignment instanceof OMWGAlignment );
+	FileOutputStream stream = new FileOutputStream("examples/omwg/wine2.xml");
+	PrintWriter writer = new PrintWriter (
+			  new BufferedWriter(
+			       new OutputStreamWriter( stream, "UTF-8" )), true);
+	AlignmentVisitor renderer = new RDFRendererVisitor( writer );
+	alignment.render( renderer );
+	writer.flush();
+	writer.close();
+    }
+
+    @Test(groups = { "full", "omwg" }, dependsOnMethods = {"loadPrintTest"})
+    public void roundTripTest() throws Exception {
+	/*
+java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter wine2.xml > wine3.xml
+	*/
+	alignment = aparser1.parse( "examples/omwg/wine2.xml" );
+	assertNotNull( alignment );
+	FileOutputStream stream = new FileOutputStream("examples/omwg/wine3.xml");
+	PrintWriter writer = new PrintWriter (
+			  new BufferedWriter(
+			       new OutputStreamWriter( stream, "UTF-8" )), true);
+	AlignmentVisitor renderer = new RDFRendererVisitor( writer );
+	alignment.render( renderer );
+	writer.flush();
+	writer.close();
+    }
+
+    @Test(groups = { "full", "omwg" }, dependsOnMethods = {"roundTripTest"})
+    public void diffTest() throws Exception {
+	/*
+diff wine2.xml wine3.xml
+	*/
+	Alignment oldal = aparser1.parse( "examples/omwg/wine2.xml" );
+	alignment = aparser1.parse( "examples/omwg/wine3.xml" );
+	assertNotNull( alignment );
+	ByteArrayOutputStream stream = new ByteArrayOutputStream(); 
+	PrintWriter writer = new PrintWriter (
+			  new BufferedWriter(
+			       new OutputStreamWriter( stream, "UTF-8" )), true);
+	AlignmentVisitor renderer = new RDFRendererVisitor( writer );
+	oldal.render( renderer );
+	writer.flush();
+	writer.close();
+	String wine2 = stream.toString();
+	stream = new ByteArrayOutputStream(); 
+	writer = new PrintWriter (
+			  new BufferedWriter(
+			       new OutputStreamWriter( stream, "UTF-8" )), true);
+	renderer = new RDFRendererVisitor( writer );
+	alignment.render( renderer );
+	writer.flush();
+	writer.close();
+	assertEquals( wine2, stream.toString() );
+    }
+}

test/src/READMETest.java

@@ -43,15 +43,21 @@ import fr.inrialpes.exmo.align.impl.BasicParameters;
 import fr.inrialpes.exmo.align.impl.URIAlignment;
 import fr.inrialpes.exmo.align.onto.OntologyCache;
 import fr.inrialpes.exmo.align.parser.AlignmentParser;
+import fr.inrialpes.exmo.align.util.NullStream;
 
 import java.io.ByteArrayOutputStream;
 import java.io.PrintWriter;
 import java.io.BufferedWriter;
 import java.io.OutputStreamWriter;
 import java.io.FileOutputStream;
+import java.io.OutputStream;
 import java.net.URI;
 import java.net.URISyntaxException;
 
+/**
+ * These tests corresponds to the README file in the main directory
+ */
+
 public class READMETest {
 
     private AlignmentProcess alignment = null;
@@ -194,33 +200,24 @@ $ java -cp lib/procalign.jar fr.inrialpes.exmo.align.util.EvalAlign -i fr.inrial
 	assertNotNull( align2 );
 	Parameters params = new BasicParameters();
 	assertNotNull( params );
-	Evaluator eval = new PRecEvaluator( align1, align2 );
+	PRecEvaluator eval = new PRecEvaluator( align1, align2 );
 	assertNotNull( eval );
 	eval.eval( params ) ;
-	    /*
-		stream = new FileOutputStream(filename);
-	    }
-	    writer = new PrintWriter (
-			  new BufferedWriter(
-			       new OutputStreamWriter( stream, "UTF-8" )), true);
-	    eval.write( writer );
-	    writer.flush();
-	    */
-	/*
-<rdf:RDF xmlns:rdf='http://www.w3.org/1999/02/22-rdf-syntax-ns#'
-  xmlns:map='http://www.atl.external.lmco.com/projects/ontology/ResultsOntology.n3#'>
-  <map:output rdf:about=''>
-    <map:input1 rdf:resource="http://ebiquity.umbc.edu/v2.1/ontology/publication.owl#publication"/>
-    <map:input2 rdf:resource="file:examples/rdf/edu.mit.visus.bibtex.owl"/>
-    <map:precision>0.8372093023255814</map:precision>
-    <map:recall>1.0</map:recall>
-    <fallout>0.16279069767441862</fallout>
-    <map:fMeasure>0.9113924050632911</map:fMeasure>
-    <map:oMeasure>0.8055555555555556</map:oMeasure>
-    <result>1.1944444444444444</result>
-  </map:output>
-</rdf:RDF>
-	*/
+
+	// This only output the result to check that this is possible
+	OutputStream stream = new NullStream();
+	PrintWriter writer = new PrintWriter (
+				  new BufferedWriter(
+					new OutputStreamWriter( stream, "UTF-8" )), true);
+	eval.write( writer );
+	writer.flush();
+	writer.close();
+	assertEquals( eval.getPrecision(), 0.7441860465116279 );
+	assertEquals( eval.getRecall(), 1.0 );
+	assertEquals( eval.getFallout(), 0.2558139534883721 );
+	assertEquals( eval.getFmeasure(), 0.8533333333333333 );
+	assertEquals( eval.getOverall(), 0.65625 );
+	//assertEquals( eval.getResult(), 1.34375 );
     }
 
     @Test(groups = { "full", "impl" })