Ready for version 4.9

README.TXT

 #######################################################################
 #              Ontology alignment API and implementation              #
-#                      20/02/2017, version 4.8+                       #
+#                      20/02/2017, version 4.9                        #
 #                  http://alignapi.gforge.inria.fr                    #
 #######################################################################
 
@@ -144,4 +144,4 @@ The alignment server is then available through HTTP with:
     	      http://localhost:8089/html/
 
 For debugging, using logback, do:
-$ java -cp lib/slf4j/logback-core-1.1.9.jar:lib/slf4j/logback-classic-1.1.9.jar:lib/alignsvc.jar -Dlogback.configurationFile=logback.xml fr.inrialpes.exmo.align.service.AlignmentService -Dwndict=../WordNet-3.1/dict -H
+$ java -cp lib/slf4j/logback-core-1.2.3.jar:lib/slf4j/logback-classic-1.2.3.jar:lib/alignsvc.jar -Dlogback.configurationFile=logback.xml fr.inrialpes.exmo.align.service.AlignmentService -Dwndict=../WordNet-3.1/dict -H

build.xml

@@ -58,8 +58,8 @@
   <target name="versionnumber" depends="bind" description="Establishes the version number">
     <tstamp><format locale="fr,fr" pattern="dd/MM/yyyy" property="date"/></tstamp>
     <property name="version.major" value="4"/>
-    <property name="version.minor" value="8"/>
-    <property name="copyyear" value="2003-2015"/>
+    <property name="version.minor" value="9"/>
+    <property name="copyyear" value="2003-2017"/>
     <!-- first attempt -->
     <exec executable="svnversion" outputproperty="svn.rev" failifexecutionfails="false"/>
     <condition property="svn.revision" value="${svn.rev}" else="nosvn">
@@ -128,15 +128,22 @@
       // let see if we can put a css
       <formatter type="xml" toFile="test/html/checkstyle.xml"/>
     </checkstyle-->
-    <!-- FindBugs
-    <taskdef name="findbugs" classpath="${tooldir}/findbugs/findbugs-ant.jar" classname="edu.umd.cs.findbugs.anttask.FindBugsTask"/>
-    <findbugs home="test/html/"
-	      output="xml"
-	      outputFile="bcel-fb.xml" >
-      //<auxClasspath path="${basedir}/lib/Regex.jar" />
+    <!-- For running findbugs:
+	 unzip findbugs release anywhere
+	 link it to tools/findbugs (or its lib directory to tools/findbugs/lib)
+    -->
+    <taskdef name="findbugs" classpath="${tooldir}/findbugs/lib/findbugs-ant.jar" classname="edu.umd.cs.findbugs.anttask.FindBugsTask" />
+    <findbugs home="${tooldir}/findbugs"
+              output="html"
+	      sort="false"
+              outputFile="test/html/bugs.html" >
+      <auxClasspath path="lib/oyster/oyster.jar" />
       <sourcePath path="src" />
       <class location="lib/align.jar" />
-    </findbugs-->
+      <class location="lib/procalign.jar" />
+      <class location="lib/ontowrap.jar" />
+      <class location="lib/alignsvc.jar" />
+    </findbugs>
     <!-- Use PMD
     <taskdef name="pmd" classpath="${tooldir}/pmd/pmd-ant.jar" classname="net.sourceforge.pmd.ant.PMDTask"/>
     <pmd shortFilenames="true">
@@ -146,12 +153,20 @@
       <fileset dir="/usr/local/j2sdk1.4.1_01/src/">
 	<include name="java/lang/*.java"/>
       </fileset>
-    </pmd-->
+      </pmd-->
+  </target>
+  
+  <target name="depend" depends="jar" description="Perform dependency analysis of code">
     <echo message="Wait... this is quite long" />
+    <!-- For running tattletale:
+	 unzip tattletale release anywhere
+	 link it to tools/tattletale
+    -->
     <taskdef name="tattletale-report"
              classname="org.jboss.tattletale.ant.ReportTask"
-             classpath="${tooldir}/tattletale/tattletale-ant.jar:${tooldir}/tattletale/tattletale.jar:${tooldir}/tattletale/javassist.jar"/>
-    <tattletale-report source="lib" destination="tattletale"/>
+	     classpath="${tooldir}/tattletale/tattletale-ant.jar:${tooldir}/tattletale/tattletale.jar:${tooldir}/tattletale/javassist.jar"/>
+    <tattletale-report source="lib" destination="tattletale" blacklisted="ch.qos.logback" />
+    <!-- blacklisted nor excludes seems to work (may be old version) -->
     <!-- For tattletale, look at dependencies in "tattletale/graphviz/dependencies.dot" -->
     <!-- Emma (coverage) seems really difficult -->
     <!--taskdef resource="emma_ant.properties" classpathref="emma.lib" /-->

html/lib.html

@@ -7,7 +7,7 @@
 </head>
 <body bgcolor="#ffffff">
 
-<h1 class="titre">Alignment API: Libraries shipped with the package (release 4.9-)</h1>
+<h1 class="titre">Alignment API: Libraries shipped with the package (release 4.9)</h1>
 
 <p>The Alignment API uses a number of external libraries.
 These libraries are shipped (in the lib directory) with the Alignment API.

html/relnotes.html

@@ -63,7 +63,7 @@ with a warning:
 
 <!--h2>Version 4.10 (2xxx): ??/??/201X - Pumpkin risotto</h2-->
 
-<!--h2>Version 4.9 (21xx): ??/07/2017 - Letraset</h2-->
+<h2>Version 4.9 (2155): 19/07/2017 - Letraset</h2>
 
 <p><ul compact="1">
 <li><span style="color: red;">Suppressed</span> empty constructor in <tt>DBServiceImpl</tt> (serv)</li>

lib/align.pom

@@ -16,8 +16,8 @@
 
   <groupId>org.semanticweb.owl</groupId>
   <artifactId>align</artifactId>
-  <version>4.8</version>
-  <!-- Rev 2093:2095M 20/11/2015 -->
+  <version>4.9</version>
+  <!-- Rev 2148:2154M 19/07/2017 -->
   <name>The Alignment API</name>
   <description>The Alignment API is an API for manipulating ontology alignments.</description>
   <url>http://alignapi.gforge.inria.fr</url>
@@ -25,7 +25,7 @@
     <name>INRIA Exmo team</name>
     <url>http://exmo.inria.fr</url>
   </organization>
-  <!-- (C) INRIA, 2003-2015 -->
+  <!-- (C) INRIA, 2003-2017 -->
   <licenses>
     <license>
       <name>GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999</name>

lib/alignsvc.pom

@@ -16,8 +16,8 @@
 
   <groupId>fr.inrialpes.exmo.align</groupId>
   <artifactId>alignsvc</artifactId>
-  <version>4.8</version>
-  <!-- Rev 2093:2095M 20/11/2015 -->
+  <version>4.9</version>
+  <!-- Rev 2148:2154M 19/07/2017 -->
   <name>Alignment server</name>
   <description>A server for storing and sharing ontology alignments.</description>
   <url>http://alignapi.gforge.inria.fr</url>
@@ -25,7 +25,7 @@
     <name>INRIA Exmo team</name>
     <url>http://exmo.inria.fr</url>
   </organization>
-  <!-- (C) INRIA, 2003-2015 -->
+  <!-- (C) INRIA, 2003-2017 -->
   <licenses>
     <license>
       <name>GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999</name>
@@ -42,19 +42,19 @@
     <dependency>
       <groupId>org.semanticweb.owl</groupId>
       <artifactId>align</artifactId>
-      <version>4.8</version>
+      <version>4.9</version>
       <scope>compile</scope>
     </dependency>
     <dependency>
       <groupId>fr.inrialpes.exmo</groupId>
       <artifactId>ontowrap</artifactId>
-      <version>4.8</version>
+      <version>4.9</version>
       <scope>compile</scope>
     </dependency>
     <dependency>
       <groupId>fr.inrialpes.exmo.align</groupId>
       <artifactId>procalign</artifactId>
-      <version>4.8</version>
+      <version>4.9</version>
       <scope>compile</scope>
     </dependency>
     <dependency>

lib/ontowrap.pom

@@ -16,8 +16,8 @@
 
   <groupId>fr.inrialpes.exmo</groupId>
   <artifactId>ontowrap</artifactId>
-  <version>4.8</version>
-  <!-- Rev 2093:2095M 20/11/2015 -->
+  <version>4.9</version>
+  <!-- Rev 2148:2154M 19/07/2017 -->
   <name>Ontology wrapping API</name>
   <description>An ontology wrapping API and library.</description>
   <url>http://alignapi.gforge.inria.fr</url>
@@ -25,7 +25,7 @@
     <name>INRIA Exmo team</name>
     <url>http://exmo.inria.fr</url>
   </organization>
-  <!-- (C) INRIA, 2003-2015 -->
+  <!-- (C) INRIA, 2003-2017 -->
   <licenses>
     <license>
       <name>GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999</name>

lib/procalign.pom

@@ -16,8 +16,8 @@
 
   <groupId>fr.inrialpes.exmo.align</groupId>
   <artifactId>procalign</artifactId>
-  <version>4.8</version>
-  <!-- Rev 2093:2095M 20/11/2015 -->
+  <version>4.9</version>
+  <!-- Rev 2148:2154M 19/07/2017 -->
   <name>Reference implementation of the Alignment API</name>
   <description>Implementation of the Alignment API for manipulating ontology alignments.</description>
   <url>http://alignapi.gforge.inria.fr</url>
@@ -25,7 +25,7 @@
     <name>INRIA Exmo team</name>
     <url>http://exmo.inria.fr</url>
   </organization>
-  <!-- (C) INRIA, 2003-2015 -->
+  <!-- (C) INRIA, 2003-2017 -->
   <licenses>
     <license>
       <name>GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999</name>
@@ -42,13 +42,13 @@
     <dependency>
       <groupId>org.semanticweb.owl</groupId>
       <artifactId>align</artifactId>
-      <version>4.8</version>
+      <version>4.9</version>
       <scope>compile</scope>
     </dependency>
     <dependency>
       <groupId>fr.inrialpes.exmo</groupId>
       <artifactId>ontowrap</artifactId>
-      <version>4.8</version>
+      <version>4.9</version>
       <scope>compile</scope>
     </dependency>
     <dependency>