Correction of method protected Set<?> getEntities(Class<? extends OWLEntity>...

Correction of method protected Set<?> getEntities(Class<? extends OWLEntity> c) throws OWLException; Now it allows to return entities having an URI which does not contain the Ontology URI.

src/fr/inrialpes/exmo/align/onto/owlapi10/OWLAPIOntology.java

@@ -238,7 +238,7 @@ public class OWLAPIOntology extends BasicOntology<OWLOntology> implements HeavyL
     	Set<Object> entities = new HashSet<Object>();
 	for (Object obj : ec.entities()) {
 	    // JD: OWLEntitytCollector seems to return anonymous entities :&& ((OWLEntity)obj).getURI()!=null
-	    if (c.isInstance(obj) && ((OWLEntity) obj).getURI()!=null &&((OWLEntity) obj).getURI().toString().startsWith(onto.getURI().toString()) ){
+	    if (c.isInstance(obj) && ((OWLEntity) obj).getURI()!=null) { // &&((OWLEntity) obj).getURI().toString().startsWith(onto.getURI().toString()) ){
 		entities.add(obj);
 	    }
 	}