- added method metadata for clone and invert

src/fr/inrialpes/exmo/align/impl/BasicAlignment.java

@@ -535,7 +535,7 @@ public class BasicAlignment implements Alignment {
      * ( o', o, n, inverse(r)) iff compose(r) exists.
      */
 
-    public Alignment inverse () throws AlignmentException {
+    public Alignment inverse() throws AlignmentException {
 	BasicAlignment result = new BasicAlignment();
 	result.init( onto2, onto1 ); //getOntology1(), getOntology2()??
 	result.setFile1( getFile2() );
@@ -552,6 +552,7 @@ public class BasicAlignment implements Alignment {
 	    result.setExtension( Annotations.ALIGNNS, "derivedFrom", oldid );
 	    result.getExtensions().unsetParameter( Annotations.ALIGNNS+"id" );
 	}
+	result.setExtension( Annotations.ALIGNNS, "method", "http://exmo.inrialpes.fr/align/impl/BasicAlignment#inverse" );
 	for ( Enumeration e = namespaces.getNames() ; e.hasMoreElements(); ){
 	    String label = (String)e.nextElement();
 	    result.setXNamespace( label, getXNamespace( label ) );
@@ -601,6 +602,7 @@ public class BasicAlignment implements Alignment {
 	    align.setExtension( Annotations.ALIGNNS, "derivedFrom", oldid );
 	    align.getExtensions().unsetParameter( Annotations.ALIGNNS+"id" );
 	}
+	align.setExtension( Annotations.ALIGNNS, "method", "http://exmo.inrialpes.fr/align/impl/BasicAlignment#clone" );
 	for ( Enumeration e = namespaces.getNames() ; e.hasMoreElements(); ){
 	    String label = (String)e.nextElement();
 	    align.setXNamespace( label, getXNamespace( label ) );

src/fr/inrialpes/exmo/align/impl/OWLAPIAlignment.java

@@ -204,6 +204,7 @@ public class OWLAPIAlignment extends ObjectAlignment {
 	    align.setExtension( Annotations.ALIGNNS, "derivedFrom", oldid );
 	    align.getExtensions().unsetParameter( Annotations.ALIGNNS+"id" );
 	}
+	align.setExtension( Annotations.ALIGNNS, "method", "http://exmo.inrialpes.fr/align/impl/OWLAPIAlignment#clone" );
 	try {
 	    align.ingest( this );
 	} catch (AlignmentException ex) { ex.printStackTrace(); }

src/fr/inrialpes/exmo/align/impl/ObjectAlignment.java

@@ -126,6 +126,7 @@ public class ObjectAlignment extends BasicAlignment {
 	for ( Object ext : ((BasicParameters)extensions).getValues() ){
 	    align.setExtension( ((String[])ext)[0], ((String[])ext)[1], ((String[])ext)[2] );
 	}
+	align.setExtension( Annotations.ALIGNNS, "method", "http://exmo.inrialpes.fr/align/impl/ObjectAlignment#clone" );
 	String oldid = align.getExtension( Annotations.ALIGNNS, "id" );
 	if ( oldid != null && !oldid.equals("") ) {
 	    align.setExtension( Annotations.ALIGNNS, "derivedFrom", oldid );

src/fr/inrialpes/exmo/align/impl/URIAlignment.java

@@ -180,6 +180,7 @@ public class URIAlignment extends BasicAlignment {
 	    align.setExtension( Annotations.ALIGNNS, "derivedFrom", oldid );
 	    align.getExtensions().unsetParameter( Annotations.ALIGNNS+"id" );
 	}
+	align.setExtension( Annotations.ALIGNNS, "method", "http://exmo.inrialpes.fr/align/impl/URIAlignment#clone" );
 	try {
 	    align.ingest( this );
 	} catch (AlignmentException ex) { ex.printStackTrace(); }