- generation of procalign.jar + align.jar

build.xml

@@ -68,10 +68,16 @@
   <target name="jar" depends="compile">
     <echo message="Jarchiving..."/>
     <copy file="distrib/LICENSE.TXT" tofile="classes/LICENSE.TXT" filtering="true"/>
+    <delete file="lib/align.jar"/>
+    <jar jarfile="lib/align.jar">
+      <fileset dir="classes" includes="org/**/*.class"/>
+      <fileset dir="classes" includes="LICENSE.TXT"/>
+    </jar>
     <delete file="lib/procalign.jar"/>
     <jar jarfile="lib/procalign.jar" manifest="distrib/MANIFEST.MF">
-      <fileset dir="classes" includes="**/*.class"/>
+      <fileset dir="classes" includes="fr/**/*.class"/>
       <!--fileset dir="resources" includes="*.properties"/-->
+      <fileset dir="classes" includes="LICENSE.TXT"/>
     </jar>
   </target>
 

distrib/MANIFEST.MF

 Manifest-Version: 1.0
 Created-By: Jerome.Euzenat@inrialpes.fr 
-Class-Path: api.jar examples.jar impl.jar io.jar owltest.jar rdfparser.jar jwnl.jar dig.jar getopt.jar inference.jar commons-logging.jar log4j.jar rdfapi.jar validation.jar procalign.jar
+Class-Path: api.jar examples.jar impl.jar io.jar owltest.jar rdfparser.jar jwnl.jar dig.jar getopt.jar inference.jar commons-logging.jar log4j.jar rdfapi.jar validation.jar align.jar procalign.jar
 Main-Class: fr/inrialpes/exmo/align/util/Procalign

src/fr/inrialpes/exmo/align/impl/BasicAlignment.java

@@ -89,6 +89,7 @@ public class BasicAlignment implements Alignment {
 
     // Note: protected is a problem outside of package
     //  but everything else is public
+    // JE[15/5/2005]: This does not seem to be a problem indeed
     protected void init(OWLOntology onto1, OWLOntology onto2) {
 	this.onto1 = onto1;
 	this.onto2 = onto2;