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  • dendrogram
  • doc_test
  • extract_ec_kegg
  • master default protected
  • python2.7
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Created with Raphaël 2.2.011Feb8Jan717Dec1130Nov27201212Oct28Sep2625241976413Jul121112Jun8525May1730Apr261730Mar2120171615141315Feb876511Jan1098543219Dec14131219Nov1810Oct14Sep21Jun1915121197629May1224Apr21doc updatedoc_testdoc_testdoc testremove old rU for reading filemastermasterMerge branch 'gbk_to_fasta' into 'master'Merge branch 'master' into 'gbk_to_fasta'fix networkx py 3.0fix wiki page name with spec charfix mysql start erroradding dendrogram creation from rxn listfix manual curation to create new pwys if requiredfixing flux analysis, correctly fixing obj coef to all reaction to 0 before processing fbaadding microbiont in reconstruction source of wikidoc fixpython3 fixExtract only genus and species in genbank organism.extract_ec_keggextract_ec_keggfix mapping from database != metacycAdd script extracting EC from KEGG for a genbank file.Replace manual fasta writing by biopython fasta writing.removing withspaces added by user in formulFix padmet_stats.dendrogramdendrogramAdd verbose to dendrogram script.Add gene assoc in intersect and unique reaction files.Add reactions intersection file creation.Add reactions extraction for each cluster.Move from argparse to docopt for grammar-boolean-rapsody.Add output arguments to dendrogram script.Update dendrogram script.Fix typos dendrogram_reactions_distance.Use docopt instead of argparse.Add script creating distance dendrogram from reactions.fix genes assocfix pathway rate calculfix uncoding bug from pgdb filesfix Reaction object of libsbml are not longer hashablepython3 fixpython3 fixMerge branch 'python3' into 'master'Merge branch 'master' into 'python3'remove cookiepython2.7python2.7fix pre_pantograph