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Léo Ackermann authoredLéo Ackermann authored
help.txt 923 B
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A simple converter from Newick trees to Phylip distance matrices in O(n^2) time
Copyright (c) Léo Ackermann 2024
USAGE
nwk2phy -h/--help
⟹ Display this message
nwk2phy <newick file> --out=<outfile> [--ord=<order>, --sn=<prec>, --ssn=<prec>]
⟹ Convert the input Newick file into a Phylip distance matrix
<order> is the order of the matrix rows, the leftmost being the smallest
with respect to the order
LEAVES is the left-to-right leaves order of the tree (default)
LEXICO is the lexicographic order
RANDOM is a random order
<prec> is the either
- the number of digits after the coma in the scientif notation (--sn)
- the smallest significative number (--ssn)