Mentions légales du service

Skip to content
Snippets Groups Projects
help.txt 923 B
     ┓ ┏┓  ┓
┏┓┓┏┏┃┏┏┛┏┓┣┓┓┏
┛┗┗┻┛┛┗┗━┣┛┛┗┗┫  v.0.1
         ┛    ┛

A simple converter from Newick trees to Phylip distance matrices in O(n^2) time
Copyright (c) Léo Ackermann 2024


USAGE
    nwk2phy -h/--help
    ⟹ Display this message

    nwk2phy <newick file> --out=<outfile> [--ord=<order>, --sn=<prec>, --ssn=<prec>]
    ⟹ Convert the input Newick file into a Phylip distance matrix

    <order>   is the order of the matrix rows, the leftmost being the smallest
              with respect to the order
              LEAVES is the left-to-right leaves order of the tree (default)
              LEXICO is the lexicographic order
              RANDOM is a random order

    <prec>    is the either
              - the number of digits after the coma in the scientif notation (--sn)
              - the smallest significative number (--ssn)