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Created with Raphaël 2.2.027Jul2421181174329Jun27262322201386516May1528Mar273213Feb43227Janinstall post-treatments on make installremove stale cmake-install DESTINATION optionfix warning on release buildadd json output for user interfaceadd UserInterfaceOutput::write_environment_outputadd UserInterfaceOutput::write_grid_outputadd UserInterfaceOutput::write_indiv_output()add ExpManager_7::write_ui_output()add UserInterfaceOutput::nothing_to_output()setup UI outputadd aevol_run option --ui-output-frequencyadd aevol_run option --ui-output-dirget option_index from getoptremove stale includeremove duplicate includesadd accessor Indiv::fitness()add trailing underscore -> Indiv::fitness_add ExpManager_7::setup_ui_outputadd ExpManager_7::user_interface_output_add json support to UserInterfaceOutputadd UserInterfaceOutput::frequency_add UserInterfaceOutput::outdir_add class io/UserInterfaceOutputlink aevol libs to json libadd external dependency (json)add cmake version policybump cmake minimum versionextract protein management in class ProteinListfix test scripts that read a lineage filedocument fcn reinit_proteins_inheritedrename variable -> proteins_cosmeticmake data members protectedmake add_translated_protein also add to main listextract fcn add_translated_proteinadd accessor signal_proteins()extract fcn set_signal_proteins_concentrationextract fcn reset_signal_proteins_concentration()add fcn add_signal_proteinsadd fcn add_inherited_protein()