remove commented debug code

src/libaevol/7/Rna_7.cpp

@@ -106,7 +106,6 @@ double Rna_7::affinity_with_protein( int32_t index, Protein_7 *protein, Individu
         }
       }
 
-      // printf("Quadon %d : %d / %d %d %d %d\n",index,pos,quadon[0],quadon[1],quadon[2],quadon[3]);
       quadon_tab[pos - index] = quadon[0] + quadon[1] + quadon[2] + quadon[3];
     }
 
@@ -123,9 +122,6 @@ double Rna_7::affinity_with_protein( int32_t index, Protein_7 *protein, Individu
                                                    protein->codon_list[i + j]);
         }
       }
-      // if (temp > 0.0)
-        // printf("%d -- %d => %lf\n",indiv->indiv_id,index,
-        //                                             temp);
       max = (max < temp) ? temp : max;
     }
 
@@ -142,39 +138,14 @@ double Rna_7::compute_synthesis_rate() {
     double enhancer_activity = 0;
     double operator_activity = 0;
 
-//for (auto affinity = affinity_list.begin(); affinity != affinity_list.end(); affinity++) {
     #pragma omp simd reduction(+:enhancer_activity,operator_activity) 
     for (decltype(affinity_list.size()) i = 0; i < affinity_list.size(); i++) {
       enhancer_activity +=
           affinity_list[i].enhancer_factor * affinity_list[i].concentration();
       operator_activity +=
           affinity_list[i].operator_factor * affinity_list[i].concentration();
-
-    //  if (AeTime::time() == 85303)
-      //  printf("%d -- %d -- RNA %d Protein %d (%lf) :: Enhancer %lf Operator %lf\n",AeTime::time(),
-      //                            #ifdef HAVE_MPI
-      // indiv->exp_m_->exp_m_7_->localXtoGlobalX(indiv->indiv_id / indiv->exp_m_->exp_m_7_->grid_height_)*indiv->exp_m_->exp_m_7_->global_grid_height_+indiv->exp_m_->exp_m_7_->localYtoGlobalY(indiv->indiv_id % indiv->exp_m_->exp_m_7_->grid_height_)
-      // indiv_id / grid_height_,indiv_id % grid_height_,
-      // localXtoGlobalX(indiv_id / grid_height_),localYtoGlobalY(indiv_id % grid_height_),
-      // #else
-      // indiv->indiv_id
-      // #endif
-      // ,begin,affinity.protein->protein_start,
-      //         affinity.concentration(), affinity.enhancer_factor, affinity.operator_factor);
     }
 
-//    if (indiv->indiv_id==137)
-    //  if (enhancer_activity !=0 ||  operator_activity != 0) 
-    //   printf("%d -- %d -- RNA %d Enhancer %lf Operator %lf\n",AeTime::time(),
-    //                              #ifdef HAVE_MPI
-    //   indiv->exp_m_->exp_m_7_->localXtoGlobalX(indiv->indiv_id / indiv->exp_m_->exp_m_7_->grid_height_)*indiv->exp_m_->exp_m_7_->global_grid_height_+indiv->exp_m_->exp_m_7_->localYtoGlobalY(indiv->indiv_id % indiv->exp_m_->exp_m_7_->grid_height_)
-    //   // indiv_id / grid_height_,indiv_id % grid_height_,
-    //   // localXtoGlobalX(indiv_id / grid_height_),localYtoGlobalY(indiv_id % grid_height_),
-    //   #else
-    //   indiv->indiv_id
-    //   #endif
-    //       ,begin,enhancer_activity,operator_activity);
-
     ProteinConcentration enhancer_activity_pow_n =
         enhancer_activity == 0
         ? 0
@@ -186,28 +157,6 @@ double Rna_7::compute_synthesis_rate() {
         : pow(operator_activity,
               exp_manager->exp_s()->get_hill_shape_n());
 
-    // if ((indiv->exp_m_->exp_s()->get_hill_shape() /
-    //      (operator_activity_pow_n + indiv->exp_m_->exp_s()->get_hill_shape())) *
-    //     (1 + ((1 / e) - 1) * (enhancer_activity_pow_n /
-    //                           (enhancer_activity_pow_n +
-    //                            indiv->exp_m_->exp_s()->get_hill_shape()))) != 1.0)
-    // printf("%d -- %d -- RNA %d : E %lf New_E %lf -- OP %lf OP_POW %lf :: EP %lf EP_POW %lf\n",
-    // AeTime::time(),
-    //                              #ifdef HAVE_MPI
-    //   indiv->exp_m_->exp_m_7_->localXtoGlobalX(indiv->indiv_id / indiv->exp_m_->exp_m_7_->grid_height_)*indiv->exp_m_->exp_m_7_->global_grid_height_+indiv->exp_m_->exp_m_7_->localYtoGlobalY(indiv->indiv_id % indiv->exp_m_->exp_m_7_->grid_height_)
-    //   // indiv_id / grid_height_,indiv_id % grid_height_,
-    //   // localXtoGlobalX(indiv_id / grid_height_),localYtoGlobalY(indiv_id % grid_height_),
-    //   #else
-    //   indiv->indiv_id
-    //   #endif
-    //       ,
-    // begin,e,
-    //                            e *
-    //     (indiv->exp_m_->exp_s()->get_hill_shape() /
-    //      (operator_activity_pow_n + indiv->exp_m_->exp_s()->get_hill_shape())) *
-    //     (1 + ((1 / e) - 1) * (enhancer_activity_pow_n /
-    //                           (enhancer_activity_pow_n +
-    //                            indiv->exp_m_->exp_s()->get_hill_shape()))), operator_activity,operator_activity_pow_n,enhancer_activity,enhancer_activity_pow_n);
     return
         e *
         (exp_manager->exp_s()->get_hill_shape() /