setup unit tests for Dna_7

test/gtest/CMakeLists.txt

@@ -16,6 +16,7 @@ set(test_libs
 # List of all the tests
 set(TESTS
   SampleTest
+  DnaTest
   IndividualTest
   JumpingMTTest
   TranscriptionTranslationTest

test/gtest/DnaTest.cpp

+// ****************************************************************************
+//
+//          Aevol - An in silico experimental evolution platform
+//
+// ****************************************************************************
+//
+// Copyright: See the AUTHORS file provided with the package or <www.aevol.fr>
+// Web: http://www.aevol.fr/
+// E-mail: See <http://www.aevol.fr/contact/>
+// Original Authors : Guillaume Beslon, Carole Knibbe, David Parsons
+//
+// This program is free software: you can redistribute it and/or modify
+// it under the terms of the GNU General Public License as published by
+// the Free Software Foundation, either version 2 of the License, or
+// (at your option) any later version.
+//
+// This program is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+// GNU General Public License for more details.
+//
+// You should have received a copy of the GNU General Public License
+// along with this program.  If not, see <http://www.gnu.org/licenses/>.
+//
+//*****************************************************************************
+
+
+
+
+// =================================================================
+//                              Includes
+// =================================================================
+#include <gtest/gtest.h>
+
+#include <array>
+#include <memory>
+#include <string>
+
+#include "Dna_7.h"
+#include "macros.h"
+
+using namespace aevol;
+
+//############################################################################
+//                                                                           #
+//                         Class IndividualTest                              #
+//                                                                           #
+//############################################################################
+class DnaTest : public testing::Test
+{
+ protected:
+  virtual void SetUp(void);
+  virtual void TearDown(void);
+
+  std::string genome1;
+  Dna_7* dna1;
+};
+
+// ===========================================================================
+//                                 Public Methods
+// ===========================================================================
+void DnaTest::SetUp(void) {
+  // Build ad-hoc dna
+  //
+  // dna1: AS + prom + AS + AG + AS + term + AS + prom + AS
+  //
+  // AS = Arbitrary Sequence
+  // AG = Arbitrary Gene
+  // Do not modify the sequences !
+
+  // Define arbitrary sequences
+  std::array<std::string, 5> as = {
+    "0011",
+    "11101",
+    "110011",
+    "11000",
+    "000101"
+  };
+
+  // Define an arbitrary gene
+  std::string gene = std::string(SHINE_DAL_SEQ) + "0011000100110110010001";
+
+  // Define an arbitrary terminator
+  std::string term = "01000001101";
+
+  // Define a few arbitrary promoters
+  std::array<std::string, 2> prom = {
+    "0101010001110110010110", // dist from consensus: 2 => basal level: 0.6
+    "0101011001110010010010"  // dist from consensus: 1 => basal level: 0.8
+  };
+
+  // Build dna1
+  genome1 =  as[0] + prom[0] + as[1] + gene + as[2] + term + as[3] + prom[1] + as[4];
+
+  dna1 = Dna_7::make_from_sequence(genome1.c_str(), genome1.size());
+}
+
+void DnaTest::TearDown() {
+  Dna_7::release(std::move(dna1));
+}
+
+TEST_F(DnaTest, TestDna) {
+  // Check genome size
+  EXPECT_EQ(genome1.size(), dna1->length());
+}