add recombinations_ to DnaReplicationReport

src/libaevol/io/DnaReplicationReport.cpp

@@ -45,6 +45,7 @@
 #include "SmallDeletion.h"
 #include "PointMutation.h"
 #include "SmallInsertion.h"
+#include "Recombination.h"
 
 namespace aevol {
 
@@ -55,6 +56,9 @@ void DnaReplicationReport::clear() {
         ht_.clear();
         rearrangements_.clear();
         mutations_.clear();
+        #ifdef __EUKARYOTE
+        recombinations_.clear();
+        #endif
 
     nb_mut_[SWITCH] = 0;
     nb_mut_[S_INS]  = 0;
@@ -65,6 +69,9 @@ void DnaReplicationReport::clear() {
     nb_mut_[INV]    = 0;
     nb_mut_[INS_HT] = 0;
     nb_mut_[REPL_HT]= 0;
+    #ifdef __EUKARYOTE
+    nb_mut_[RECOMB] = 0;
+    #endif
     }
 
 DnaReplicationReport::DnaReplicationReport(const DnaReplicationReport& other) {

src/libaevol/io/DnaReplicationReport.h

@@ -34,6 +34,7 @@
 #include "LocalMutation.h"
 #include "HorizontalTransfer.h"
 #include "Rearrangement.h"
+#include "Recombination.h"
 
 namespace aevol {
 
@@ -74,6 +75,11 @@ class DnaReplicationReport {
   const std::list<std::unique_ptr<const HorizontalTransfer>>& HT() const {
     return ht_;
   };
+  #ifdef __EUKARYOTE
+  const std::list<std::unique_ptr<const Recombination>>& recombinations() const {
+    return recombinations_;
+  };
+  #endif
   int32_t nb(MutationType t) const;
 
   // Public Methods
@@ -105,6 +111,9 @@ class DnaReplicationReport {
   std::list<std::unique_ptr<const LocalMutation>> mutations_;
   std::list<std::unique_ptr<const Rearrangement>> rearrangements_;
   std::list<std::unique_ptr<const HorizontalTransfer>> ht_;
+  #ifdef __EUKARYOTE
+  std::list<std::unique_ptr<const Recombination>> recombinations_;
+  #endif
   // Number of mutations/rearrangements/HT of each (simple) type undergone
   int32_t nb_mut_[10] = {0,0,0,0,0,0,0,0,0,0};
 };