src/libaevol/7/Dna_7.h

src/libaevol/7/ExpManager_7.cpp

src/libaevol/CMakeLists.txt

src/libaevol/alignments/Alignment.h

src/libaevol/alignments/AlignmentParams.cpp

src/libaevol/alignments/AlignmentParams.h

src/libaevol/alignments/FunctionShape.h

src/libaevol/alignments/RecombAlignmentSearcher.cpp

src/libaevol/alignments/RecombAlignmentSearcher.h

src/libaevol/alignments/ScoreFunction.cpp

src/libaevol/alignments/ScoreFunction.h

src/libaevol/io/parameters/ParamReader.cpp

src/libaevol/io/parameters/ParamValues.h

src/libaevol/world/ExpSetup.cpp

src/libaevol/world/ExpSetup.h