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// ****************************************************************************
//
// Aevol - An in silico experimental evolution platform
//
// ****************************************************************************
//
// Copyright: See the AUTHORS file provided with the package or <www.aevol.fr>
// Web: http://www.aevol.fr/
// E-mail: See <http://www.aevol.fr/contact/>
// Original Authors : Guillaume Beslon, Carole Knibbe, David Parsons
//
// This program is free software: you can redistribute it and/or modify
// it under the terms of the GNU General Public License as published by
// the Free Software Foundation, either version 2 of the License, or
// (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU General Public License for more details.
//
// You should have received a copy of the GNU General Public License
// along with this program. If not, see <http://www.gnu.org/licenses/>.
//
// ****************************************************************************
#ifndef AEVOL_RECOMBINATION_H_
#define AEVOL_RECOMBINATION_H_
// ============================================================================
// Includes
// ============================================================================
#include "sys/types.h"
#include "Mutation.h"
namespace aevol {
/**
*
*/
class Recombination : public Mutation {
public :
// ==========================================================================
// Constructors
// ==========================================================================
Recombination() = default; //< Default ctor
Recombination(const Recombination&) = default; //< Copy ctor
// The move constructor is implicitly deleted.
Recombination(int32_t posA, int32_t posB, int16_t align_score = -1) :
posA_{posA}, posB_{posB}, align_score_{align_score} {}
virtual Mutation* Clone() const override { return new Recombination(*this); };
// ==========================================================================
// Destructor
// ==========================================================================
virtual ~Recombination() noexcept = default; //< Destructor
// ==========================================================================
// Operators
// ==========================================================================
// The copy and move operators are implicitly deleted.
// ==========================================================================
// Public Methods
// ==========================================================================
virtual void save(gzFile backup_file) const override;
virtual void load(gzFile backup_file) override;
std::string generic_description_string() const override;
// ==========================================================================
// Getters
// ==========================================================================
virtual MutationType mut_type() const override { return RECOMB; };
int32_t posA() const { return posA_; }
int32_t posB() const { return posB_; }
int16_t align_score() const { return align_score_; }
// ==========================================================================
// Setters
// ==========================================================================
protected :
// ==========================================================================
// Protected Methods
// ==========================================================================
// ==========================================================================
// Attributes
// ==========================================================================
int32_t posA_, posB_;
int16_t align_score_ = -1;
};
} // namespace aevol
#endif