plafrim: Update manifest and pinned channels.

* plafrim/manifest.scm: Extend and update.
* plafrim/channels.pinned.scm: Update.

plafrim/channels.pinned.scm

@@ -2,47 +2,58 @@
 ;;; These channels are pinned to revisions that were last deploy on PlaFRIM.
 
 (list (channel
+        (name 'guix-hpc)
+        (url "https://gitlab.inria.fr/guix-hpc/guix-hpc.git")
+        (branch "master")
+        (commit
+          "f2cf0b9abaa9eb561885b352354eba07a10fe794"))
+      (channel
+        (name 'guix-hpc-non-free)
+        (url "https://gitlab.inria.fr/guix-hpc/guix-hpc-non-free.git")
+        (branch "master")
+        (commit
+          "f66ea27867f65eddb6c8ca72476a3b9abc446b02"))
+      (channel
         (name 'guix)
         (url "https://git.savannah.gnu.org/git/guix.git")
         (branch "master")
         (commit
-          "597f1cd1c46ffb92c3e0145de0071545a4c64865")
+          "3a916935311568b742d734cf76be8a45737f9382")
         (introduction
           (make-channel-introduction
             "9edb3f66fd807b096b48283debdcddccfea34bad"
             (openpgp-fingerprint
               "BBB0 2DDF 2CEA F6A8 0D1D  E643 A2A0 6DF2 A33A 54FA"))))
-      (channel
-        (name 'guix-hpc-non-free)
-        (url "https://gitlab.inria.fr/guix-hpc/guix-hpc-non-free.git")
-        (branch "master")
-        (commit
-          "372c5f471448b32c9204f79c1d46e9b984d03c07"))
       (channel
         (name 'guix-science-nonfree)
         (url "https://codeberg.org/guix-science/guix-science-nonfree.git")
         (branch "master")
         (commit
-          "9a3f3824d8ed289832d706679410edadac1202ae")
+          "448d45309785272ba37510c6ef7b1dba9c4ddae4")
         (introduction
           (make-channel-introduction
             "58661b110325fd5d9b40e6f0177cc486a615817e"
             (openpgp-fingerprint
               "CA4F 8CF4 37D7 478F DA05  5FD4 4213 7701 1A37 8446"))))
       (channel
-        (name 'guix-past)
-        (url "https://codeberg.org/guix-science/guix-past.git")
+        (name 'guix-science)
+        (url "https://codeberg.org/guix-science/guix-science.git")
         (branch "master")
         (commit
-          "1e25b23faa6b1716deaf7e1782becb5da6855942")
+          "7e13c84238b11fd138fbfe2644a9ebf0b8f763c4")
         (introduction
           (make-channel-introduction
-            "0c119db2ea86a389769f4d2b9c6f5c41c027e336"
+            "b1fe5aaff3ab48e798a4cce02f0212bc91f423dc"
             (openpgp-fingerprint
-              "3CE4 6455 8A84 FDC6 9DB4  0CFB 090B 1199 3D9A EBB5"))))
+              "CA4F 8CF4 37D7 478F DA05  5FD4 4213 7701 1A37 8446"))))
       (channel
-        (name 'guix-hpc)
-        (url "https://gitlab.inria.fr/guix-hpc/guix-hpc.git")
+        (name 'guix-past)
+        (url "https://codeberg.org/guix-science/guix-past.git")
         (branch "master")
         (commit
-          "3ffe8f79a2f128111785fb1107d5f803e00bf00c")))
+          "70fc56e752ef6d5ff6e1e1a0997fa72e04337b24")
+        (introduction
+          (make-channel-introduction
+            "0c119db2ea86a389769f4d2b9c6f5c41c027e336"
+            (openpgp-fingerprint
+              "3CE4 6455 8A84 FDC6 9DB4  0CFB 090B 1199 3D9A EBB5")))))

plafrim/manifest.scm

 ;;; This module extends GNU Guix and is licensed under the same terms, those
 ;;; of the GNU GPL version 3 or (at your option) any later version.
 ;;;
-;;; Copyright © 2023, 2024 Inria
+;;; Copyright © 2023-2025 Inria
 
 ;;; This manifest is used to generate environment modules for the PlaFRIM
 ;;; cluster.  Create or update modules with:
@@ -43,26 +43,29 @@ a package."
    ;;(cut manifest-entry-with-category <> "compiler")
    identity
    (specifications->manifest
-    '("gcc-toolchain@13"
+    '("gcc-toolchain@13" "gcc-toolchain@14"
       "gcc-toolchain@12" "gcc-toolchain@11"
       "gcc-toolchain@10" "gcc-toolchain@9"
       "gfortran-toolchain"
-      "clang-toolchain@17"
+      "clang-toolchain@17" "clang-toolchain@18"
       "clang-toolchain@15" "clang-toolchain@16"
       "clang-toolchain@14" "clang-toolchain@13"
-      "clang-toolchain@12" "clang-toolchain@11"
       "python-lit"))))
 
 (define base-tools
   (specifications->manifest
-   '("python" "python-numpy" "python-scipy"
+   '("python" "python-numpy" "python-numpy@1" "python-scipy"
      "python-scikit-learn"
      "python-scikit-fuzzy" "python-scikit-image" "python-scikit-rebate"
      "python-pytorch"
 
      "julia"
      "pari-gp"
-     "openmpi@4" "mpich" "nmad" "hwloc" "intel-mpi-benchmarks" ;MPI
+
+     "openmpi@5" "openmpi@4" "openmpi-rocm"       ;MPI
+     "mpich" "nmad" "hwloc"
+     "intel-mpi-benchmarks"
+     "osu-micro-benchmarks" "osu-micro-benchmarks-rocm"
 
      "gmp" "mpfr" "mpc"                           ;multiprecision
 
@@ -78,8 +81,8 @@ a package."
      "cmake" "make" "pkg-config"
      "autoconf" "automake" "libtool" "gettext" "texinfo"
 
-     "slurm@23" "slurm@22"
-     "slurm@20.11" "slurm@20.02" "slurm@19" "slurm@18"
+     "slurm@23.11" "slurm@22"
+     "slurm@20.11" "slurm@20.02"
      "irods"
 
      ;; Various utilities.
@@ -117,11 +120,12 @@ a package."
 (define non-free-tools
   ;; (packages->manifest (select-packages-by-location "non-free/"))
   (specifications->manifest
-   '("cuda-toolkit@11" "cuda-toolkit@10" "cuda-toolkit@8"
-     "intel-compilers" "mkl"
+   '("cuda-toolkit@12" "cuda-toolkit@11" "cuda-toolkit@10"
+     ;; "intel-compilers" ;FIXME: "source" tarball for 2020.0.x vanished
+     "intel-oneapi-mkl"
 
-     "openmpi-cuda"
-     "python-pytorch-with-cuda11"
+     "openmpi-cuda" "osu-micro-benchmarks-cuda"
+     "python-pytorch-with-cuda12"
      "starpu-cuda" "chameleon-cuda" "chameleon-mkl-mt")))
 
 (concatenate-manifests