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Machine learning for population genetics
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Created date
Pj/new feature/save best net
dnadna!42
· created
Oct 22, 2020
by
JOBIC Pierre
Release 1.0.0
Merged
16
Approved
updated
Dec 14, 2020
[refactoring] clean up the semantics of when/whether SNP and POS arrays are copied when instantiating an SNPSample
dnadna!41
· created
Oct 12, 2020
by
E. Madison Bray
component: datasets
priority: high
type: bug
Merged
1
updated
Oct 12, 2020
[bug] faster implementation of NpzSNPSource._guess_filename
dnadna!40
· created
Oct 09, 2020
by
E. Madison Bray
component: datasets
type: bug
Merged
updated
Mar 18, 2021
Version enhancements
dnadna!39
· created
Aug 12, 2020
by
E. Madison Bray
component: cli
component: training
priority: medium
type: enhancement
Merged
updated
Feb 12, 2021
Don't write checkpoints or error logs by default when calling ModelTrainer.train()
dnadna!38
· created
Aug 07, 2020
by
E. Madison Bray
component: training
priority: high
type: bug
Merged
updated
Aug 07, 2020
[bug][!33] alternative fix for the issue raised in MR !33
dnadna!37
· created
Jul 29, 2020
by
E. Madison Bray
component: datasets
priority: high
type: bug
Merged
5
updated
Aug 03, 2020
TensorBoard and Checkpoint for model
dnadna!36
· created
Jul 29, 2020
by
JOBIC Pierre
Merged
21
updated
Oct 22, 2020
Docs
dnadna!35
· created
Jul 27, 2020
by
JOBIC Pierre
Closed
2
updated
Jul 27, 2021
Position normalization
dnadna!34
· created
Jul 21, 2020
by
E. Madison Bray
component: datasets
priority: high
type: enhancement
Merged
18
updated
Mar 22, 2021
Handling multiple dataset name format
dnadna!33
· created
Jul 21, 2020
by
JOBIC Pierre
Closed
21
updated
Aug 03, 2020
Draft: Resolve "Upgrade to PyTorch 1.5"
dnadna!32
· created
Jul 21, 2020
by
JOBIC Pierre
priority: medium
type: task
Closed
23
Approved
updated
Jun 21, 2021
WIP: Resolve "Work with another dataset: ValueError("No objects to concatenate")"
dnadna!31
· created
Jul 21, 2020
by
JOBIC Pierre
component: datasets
type: bug
6
updated
Jul 21, 2020
Added dnadna/info.py
dnadna!30
· created
Jul 15, 2020
by
JOBIC Pierre
26
updated
Nov 01, 2020
WIP: Resolve "Add CLI interface to list networks, their descriptions, and any options they take"
dnadna!29
· created
Jul 15, 2020
by
JOBIC Pierre
component: nets
priority: medium
type: enhancement
Closed
updated
Jul 15, 2020
Improve raised InvalidSNPSample Error
dnadna!28
· created
Jul 10, 2020
by
Jean Cury
component: cli
component: training
priority: medium
type: enhancement
Merged
1
updated
Jul 17, 2020
WIP: add -V/--version arguments with tests
dnadna!27
· created
Jul 03, 2020
by
Jean Cury
component: cli
priority: low
Closed
9
updated
Oct 14, 2020
[enhancement] add separate random seed for pre-processing
dnadna!26
· created
Jun 24, 2020
by
E. Madison Bray
component: datasets
priority: medium
type: enhancement
Merged
updated
Jun 24, 2020
[bug][#34] remove superfluous squeeze/unsqueeze from this code which led to a
dnadna!25
· created
Jun 16, 2020
by
E. Madison Bray
component: training
priority: high
type: bug
Merged
updated
Jul 21, 2020
Initial prototype of `dnadna predict` command
dnadna!24
· created
Jun 15, 2020
by
E. Madison Bray
Release 1.0.0
component: prediction
priority: high
type: enhancement
Merged
41
updated
Dec 14, 2020
[docker] switch to using upstream fixuid v0.5
dnadna!23
· created
Jun 12, 2020
by
E. Madison Bray
type: task
Merged
updated
Jul 22, 2020
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