.gitlab-ci.yml

# This file is a template, and might need editing before it works on your project.
# Full project: https://gitlab.com/pages/plain-html
image: conda/miniconda3

stages:
  - test
  - build
  - deploy

.template_retry:
  retry:
    max: 2
    when: runner_system_failure

releaseTest:
  stage: test
  extends: .template_retry
  tags:
    - linux
  script:
    - . "/builds/miniconda3/etc/profile.d/conda.sh"
    - conda activate base
    - mamba env update -f conda/env.yaml
    - conda activate gnomon_package_tissueimagemesh
    - python -m pip install .
    - nose2 -v
  allow_failure: false
  only:
    - master

test_MR_linux:
  stage: test
  extends: .template_retry
  tags:
    - linux
    - large
  script:
    - . "/builds/miniconda3/etc/profile.d/conda.sh"
    - conda activate base
    - mamba env update -f conda/env.yaml
    - conda activate gnomon_package_tissueimagemesh
    - python -m pip install .
    - nose2 -v
  allow_failure: false
  only:
    - merge_requests
    - develop

compileForPipelineTestLinux:
  stage: build
  extends: .template_retry
  tags:
    - linux
    - large
  script:
    - . "/builds/miniconda3/etc/profile.d/conda.sh"
    - conda activate gnomon-dev
    - mamba install -c mosaic -c conda-forge lsm3d anifilters nose2 coverage
    - python -m pip install .
    - nose2 -v
  allow_failure: false
  only:
    - develop
  needs: [test_MR_linux]

test_MR_macos:
  stage: test
  extends: .template_retry
  tags:
    - macos