EVSCLT-949 Report counter fix and HandleObjectFile DAO proxy

Impacts of Add Proxy JPA Entity for originalReport ValidationReport to be able to do LAZY loading from file system

MessageContentAnalyzer-ejb/src/main/java/net/ihe/gazelle/mca/contentanalyzer/adapters/analysis/dao/AnalysisDaoImpl.java

 package net.ihe.gazelle.mca.contentanalyzer.adapters.analysis.dao;
 
 import net.ihe.gazelle.common.application.action.ApplicationPreferenceManager;
-import net.ihe.gazelle.evsclient.application.interfaces.adapters.ProcessingNotFoundException;
 import net.ihe.gazelle.evsclient.domain.processing.UnexpectedProcessingException;
 import net.ihe.gazelle.evsclient.interlay.dao.AbstractProcessingDaoImpl;
-import net.ihe.gazelle.evsclient.interlay.dao.RepositoryType;
+import net.ihe.gazelle.evsclient.interlay.dao.HandledObjectFile;
+import net.ihe.gazelle.evsclient.interlay.dao.Repository;
 import net.ihe.gazelle.evsclient.interlay.util.FileUtil;
 import net.ihe.gazelle.hql.criterion.HQLCriterionsForFilter;
 import net.ihe.gazelle.hql.paths.HQLSafePathBasicDate;
@@ -40,8 +40,8 @@ public class AnalysisDaoImpl extends AbstractProcessingDaoImpl<Analysis> impleme
     }
 
     @Override
-    public RepositoryType getRepositoryType(Analysis processedObject) {
-        return RepositoryTypes.MCA;
+    public Repository getRepositoryType(Analysis processedObject) {
+        return McaRepositoryTypes.MCA;
     }
 
     @Override
@@ -50,7 +50,7 @@ public class AnalysisDaoImpl extends AbstractProcessingDaoImpl<Analysis> impleme
     }
 
     public Analysis getByParentAnalysisPart(AnalysisPart parentAnalysisPart) {
-        AnalysisQuery analysisQuery = new AnalysisQuery(entityManagerFactory.createEntityManager());
+        AnalysisQuery analysisQuery = new AnalysisQuery(getEntityManager());
         analysisQuery.rootAnalysisPart().id().eq(parentAnalysisPart.getId());
         return analysisQuery.getUniqueResult();
     }
@@ -85,4 +85,19 @@ public class AnalysisDaoImpl extends AbstractProcessingDaoImpl<Analysis> impleme
             }
         }
     }
+
+
+    /**
+     *
+     * {@inheritDoc}
+     *
+     * @deprecated This method is exposing internal information of the DAO mechanism and is violating responsabilies.
+     * However some legacy code are still coupled with the file mechanism (such as MCA) and must be refactored first
+     * before deleting this method.
+     */
+    @Override
+    @Deprecated
+    public HandledObjectFile getObjectDAOImpl(Analysis analysis) {
+        return getEntityManager().find(HandledObjectFile.class, analysis.getObject().getId());
+    }
 }