Feature/254 sp15 item12 create nifti dataloader for loading medical images
requested to merge feature/254-sp15-item12-create-nifti-dataloader-for-loading-medical-images into develop
Closes #254 (closed)
Changelog
- Unit testing added (including synthetic data generation).
- Lenght property of the dataset adjusts depending on the available information.
- Compatible with Dataloaders. Returns a
dict
ofdict
being the first the data sourcedata, target, demographics
and the other the modalities within each e.g.T1, T2, label, AGE, CENTER_NAME
. - Multi-format support for demographics file (
tabular_file
): CSV, TSV, Excel.
#290 (closed)
Todo for-
Add necessary attributes, properties, and methods for GUI. -
Adjust the model gathered by @sayed so data can be extracted in a compatible manner at each training_step
. -
Finishing refactoring by @mvesin
Extensions:
- Create class called
BIDSBase
where BIDS folder structure and reference verification operations are provided -
BIDSDataset
inheritsBIDSBase
- Create BIDSController that inherits
BIDSBase
. This class is used for dataset deployment actions.
Edited by CANSIZ Sergen