SP16-ITEM01: Add option to CLI to load BIDS dataset
As a clinician or a researcher, I want to load BIDS datasets through CLI without using GUI
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Update DatasetManager to load BIDS dataset - Use BIDSController to extract information regarding the dataset
- Add methods to insert BIDS dataset metadata to TindyDB
- Database record should contain:
-
shape
: can be retrieved fromBIDSController(root=bids_root).load(tabular_file, index_col).shape()
dataset_parameters : {tabular_file: "path/to/tabular/file", "index_col": 12}
path : /path/to/BIDS/root
-
type
: "BIDS"
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Configure command line interface to get BIDS root
,tabular_file
andindex_col
Edited by CREMONESI Francesco