Commits · d5cb64d0555bbeaafee98dffa12de2d8f6935542 · DEBREUVE Eric / NutriMorph

Apr 23, 2020
- tests frangi time usage · d5cb64d0
  NADAL Morgane authored 4 years ago
  
  d5cb64d0
Apr 20, 2020
- tests frangi3d skimage + python · c8b83d38
  NADAL Morgane authored 4 years ago
  
  c8b83d38
Apr 17, 2020
- small corrections · b42d61cc
  NADAL Morgane authored 4 years ago
  
  b42d61cc
Apr 16, 2020
- Graphs constructed - for the moment, use FindRootsWithNodes instead of FindRootsWithEdges · 5da5797f
  NADAL Morgane authored 4 years ago
  
  5da5797f
- clean the root search associated-codes · b5fec106
  NADAL Morgane authored 4 years ago
  
  b5fec106
Apr 15, 2020
- Find roots - some corrections · 72bdbce1
  NADAL Morgane authored 4 years ago
  
  72bdbce1
Apr 14, 2020
- Find roots · 29d45155
  NADAL Morgane authored 4 years ago
  
  29d45155
Apr 10, 2020

minor bug solving + still working on graph roots extraction · f33b81f9

NADAL Morgane authored 4 years ago

pb with ext_nfo["lmp"] which do not contain the connexion, making not possible its use for graphs and root extraction

f33b81f9

Apr 09, 2020
- Changed MIP fct (not using SimpleITK anymore) · 801bc197
  NADAL Morgane authored 4 years ago
  
  801bc197
Apr 08, 2020
- Step3 : added the soma and ext id to root node attributes · 856559c7
  NADAL Morgane authored 4 years ago
  
  + nutrimorph.py setting
  856559c7
- Step3 : FindGraphRoots finds False and True roots + added as node attribute · 7bea0236
  NADAL Morgane authored 4 years ago
  
  7bea0236
Apr 07, 2020
- bugs in graph root extration · 9322587c
  NADAL Morgane authored 4 years ago
  
  9322587c
- STEP3 = find and label the root extremities of the ext+conn graphs · 698fdeb5
  NADAL Morgane authored 4 years ago
  
  698fdeb5
Apr 06, 2020
- STEP3 = find and label the root extremities of the ext+conn graphs · 882ef02a
  NADAL Morgane authored 4 years ago
  
  882ef02a
- STEP2 = GRAPHS EXTRACTION: use SKL graph to only extract the {ext + conn} as graph · a90ec39c
  NADAL Morgane authored 4 years ago
  
  a90ec39c
Mar 26, 2020
- right prms for frangi w/ relative intensiy normalization · 81f6e4a0
  NADAL Morgane authored 4 years ago
  
  81f6e4a0
Mar 25, 2020
- adding frangi + README in parameters.ini + ToPixel · 96d784c3
  NADAL Morgane authored 4 years ago
  
  96d784c3
- Revert "added Frangi prms + README to parameters.ini" · 5649134d
  NADAL Morgane authored 4 years ago
  
  This reverts commit efbce256
  5649134d
- added Frangi prms + README to parameters.ini · efbce256
  NADAL Morgane authored 4 years ago
  
  efbce256
Mar 24, 2020
- some refactoring + identification of an essential process for soma-ext and... · f542dbe1
  NADAL Morgane authored 4 years ago
  
  some refactoring + identification of an essential process for soma-ext and connexions : NormalizedImage()
  f542dbe1
Mar 23, 2020
- Added SKLGraph module · e2ed1660
  NADAL Morgane authored 4 years ago
  
  e2ed1660
Mar 20, 2020
- killed the bug leading to no ext detected (relabel fct!) · 4f7877ca
  NADAL Morgane authored 5 years ago
  
  4f7877ca
- last modif to ToPixel (usable for dist, area, volume) · 54fbde26
  NADAL Morgane authored 5 years ago
  
  54fbde26
- doc for ToPixel (only dist and area - not volume) · ed5bd077
  NADAL Morgane authored 5 years ago
  
  ed5bd077
- some modif in image_verification.py · 3d8babfa
  NADAL Morgane authored 5 years ago
  
  3d8babfa
- corrected error in ToPixel · 87d5683e
  NADAL Morgane authored 5 years ago
  
  87d5683e
Mar 19, 2020
- corrected bugs in image_verification.py · 78cca4dc
  NADAL Morgane authored 5 years ago
  
  78cca4dc
Mar 18, 2020
- moved image_verification.py (PySide2) in brick/processing · 69e65a7e
  NADAL Morgane authored 5 years ago
  
  69e65a7e
- Created PySide2 Image Verification algo (still some bugs!!) · e995b969
  NADAL Morgane authored 5 years ago
  
  e995b969
Mar 17, 2020
- dealt with parameters issues (pixel-micron + arguments in fct) + some refactoring · d84ad67e
  NADAL Morgane authored 5 years ago
  
  d84ad67e
Mar 16, 2020
- created parameters.ini file (todo: clean up) + still working on PySide2 for ImageVerification() · e82a6e87
  NADAL Morgane authored 5 years ago
  
  e82a6e87
Mar 13, 2020
- refactoring · 56c71b36
  NADAL Morgane authored 5 years ago
  
  56c71b36
- modif FindVoxelDimensionInMicrons() w/ re expression + try-except · 3b79f558
  NADAL Morgane authored 5 years ago
  
  3b79f558
- modif IntensityNormalizedImage() · 0aa2d768
  NADAL Morgane authored 5 years ago
  
  0aa2d768
- modif ImageVerification() -> no image constant + some changes in the dimension verif · 4321a9bd
  NADAL Morgane authored 5 years ago
  
  4321a9bd
Mar 11, 2020
- modified selem (in micron) in prms + in other fcts · c753b56b
  NADAL Morgane authored 5 years ago
  
  c753b56b
- fct for intensity normalization and find voxel dimension in micron + refractoring · a7220a24
  NADAL Morgane authored 5 years ago
  
  a7220a24
Mar 10, 2020
- wrote fct for relative intensity image normalization + refractoring · baae4068
  NADAL Morgane authored 5 years ago
  
  baae4068
Mar 09, 2020
- Added the dijkstra and frangi algo (not the link). · 7745e79b
  NADAL Morgane authored 5 years ago
  
  Added an algorithm for the verification for image dimension and coherence with the parameter channel. No user interface yet because of a bug in PySide2.
  7745e79b
- added Morgane as contributor · d1519363
  DEBREUVE Eric authored 5 years ago
  
  d1519363