Commits · d3df13f8729fc6f60bf65c7968a55288f55700c0 · DEBREUVE Eric / NutriMorph

Jun 15, 2020
- solved soma_volume/convex_hull_volume issue · d3df13f8
  NADAL Morgane authored 4 years ago
  
  d3df13f8
Jun 12, 2020
- update: prm differenciation mode in frangi --> indirect · 5256359b
  NADAL Morgane authored 4 years ago
  
  5256359b
- update frangi3D + gui interface for frangi parameter determination · 96b6aca5
  NADAL Morgane authored 4 years ago
  
  96b6aca5
Jun 11, 2020
- Annotated the whole Nutrimorph script, except specific fcts in Frangi, Dijkstra and SKLGraph. · d4054214
  NADAL Morgane authored 4 years ago
  
  d4054214
Jun 08, 2020
- some modifs · 4cadf915
  NADAL Morgane authored 4 years ago
  
  4cadf915
Jun 05, 2020
- working on hysteresis bug · 4a5d39df
  NADAL Morgane authored 4 years ago
  
  4a5d39df
May 20, 2020
- solved ellipsoid axes order issue · d8c384d3
  NADAL Morgane authored 4 years ago
  
  d8c384d3
May 18, 2020
- cleaning · 5ac30385
  NADAL Morgane authored 4 years ago
  
  5ac30385
May 14, 2020
- bugs correction · f0c8c483
  NADAL Morgane authored 4 years ago
  
  f0c8c483
- bugs correction · 8105237d
  NADAL Morgane authored 4 years ago
  
  8105237d
- errors correction - graph features extraction completed · 1c3e0601
  NADAL Morgane authored 4 years ago
  
  1c3e0601
May 12, 2020
- errors correction - graph features extraction completed · 8ca33894
  NADAL Morgane authored 4 years ago
  
  8ca33894
May 11, 2020
- curvature and torsion coorection + lengths of edges in micron · cb4c0cbb
  NADAL Morgane authored 4 years ago
  
  cb4c0cbb
- curvature and torsion done · d832a4a9
  NADAL Morgane authored 4 years ago
  
  d832a4a9
- working on - curvature and tension- - phi theta ellipsoid - · dd4f0d7e
  NADAL Morgane authored 4 years ago
  
  dd4f0d7e
May 07, 2020
- dealt with hysteresis pb + added features: · a09e72c6
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  a09e72c6
May 05, 2020
- added hist lengths and thickness features · 1a094725
  NADAL Morgane authored 4 years ago
  
  1a094725
May 04, 2020
- pandas df + length in micron + reorganisation of the code · f4675835
  NADAL Morgane authored 4 years ago
  
  f4675835
Apr 30, 2020
- some corrections on features and functions · 45ff36f0
  NADAL Morgane authored 4 years ago
  
  45ff36f0
Apr 27, 2020
- best fitting ellipsoid for soma points · 174c0f74
  NADAL Morgane authored 4 years ago
  
  174c0f74
- added soma features (volume + working on best fitting ellipsoid axes) +... · 09937e58
  NADAL Morgane authored 4 years ago
  
  added soma features (volume + working on best fitting ellipsoid axes) + modified skl brick.edge algo to support None value for calculus of edge lengths
  09937e58
Apr 24, 2020
- tests frangi time and memory usage + frangi prms · 658a41a1
  NADAL Morgane authored 4 years ago
  
  658a41a1
Apr 23, 2020
- tests frangi time usage · d5cb64d0
  NADAL Morgane authored 4 years ago
  
  d5cb64d0
Apr 20, 2020
- tests frangi3d skimage + python · c8b83d38
  NADAL Morgane authored 4 years ago
  
  c8b83d38
Apr 17, 2020
- small corrections · b42d61cc
  NADAL Morgane authored 4 years ago
  
  b42d61cc
Apr 16, 2020
- Graphs constructed - for the moment, use FindRootsWithNodes instead of FindRootsWithEdges · 5da5797f
  NADAL Morgane authored 4 years ago
  
  5da5797f
- clean the root search associated-codes · b5fec106
  NADAL Morgane authored 4 years ago
  
  b5fec106
Apr 15, 2020
- Find roots - some corrections · 72bdbce1
  NADAL Morgane authored 4 years ago
  
  72bdbce1
Apr 14, 2020
- Find roots · 29d45155
  NADAL Morgane authored 4 years ago
  
  29d45155
Apr 10, 2020

minor bug solving + still working on graph roots extraction · f33b81f9

NADAL Morgane authored 4 years ago

pb with ext_nfo["lmp"] which do not contain the connexion, making not possible its use for graphs and root extraction

f33b81f9

Apr 09, 2020
- Changed MIP fct (not using SimpleITK anymore) · 801bc197
  NADAL Morgane authored 4 years ago
  
  801bc197
Apr 08, 2020
- Step3 : added the soma and ext id to root node attributes · 856559c7
  NADAL Morgane authored 4 years ago
  
  + nutrimorph.py setting
  856559c7
- Step3 : FindGraphRoots finds False and True roots + added as node attribute · 7bea0236
  NADAL Morgane authored 4 years ago
  
  7bea0236
Apr 07, 2020
- bugs in graph root extration · 9322587c
  NADAL Morgane authored 4 years ago
  
  9322587c
- STEP3 = find and label the root extremities of the ext+conn graphs · 698fdeb5
  NADAL Morgane authored 4 years ago
  
  698fdeb5
Apr 06, 2020
- STEP3 = find and label the root extremities of the ext+conn graphs · 882ef02a
  NADAL Morgane authored 4 years ago
  
  882ef02a
- STEP2 = GRAPHS EXTRACTION: use SKL graph to only extract the {ext + conn} as graph · a90ec39c
  NADAL Morgane authored 4 years ago
  
  a90ec39c
Mar 26, 2020
- right prms for frangi w/ relative intensiy normalization · 81f6e4a0
  NADAL Morgane authored 4 years ago
  
  81f6e4a0
Mar 25, 2020
- adding frangi + README in parameters.ini + ToPixel · 96d784c3
  NADAL Morgane authored 4 years ago
  
  96d784c3
- Revert "added Frangi prms + README to parameters.ini" · 5649134d
  NADAL Morgane authored 4 years ago
  
  This reverts commit efbce256
  5649134d