Commits · 67980fc4db4d5e0a2a52737d8a7de9efa7054f57 · DEBREUVE Eric / NutriMorph

May 18, 2020
- cleaning · 67980fc4
  NADAL Morgane authored 4 years ago
  
  67980fc4
May 14, 2020
- bugs correction · f0c8c483
  NADAL Morgane authored 4 years ago
  
  f0c8c483
- bugs correction · 8105237d
  NADAL Morgane authored 4 years ago
  
  8105237d
- errors correction - graph features extraction completed · 1c3e0601
  NADAL Morgane authored 4 years ago
  
  1c3e0601
May 12, 2020
- errors correction - graph features extraction completed · 8ca33894
  NADAL Morgane authored 4 years ago
  
  8ca33894
May 11, 2020
- curvature and torsion coorection + lengths of edges in micron · cb4c0cbb
  NADAL Morgane authored 4 years ago
  
  cb4c0cbb
- curvature and torsion done · d832a4a9
  NADAL Morgane authored 4 years ago
  
  d832a4a9
- working on - curvature and tension- - phi theta ellipsoid - · dd4f0d7e
  NADAL Morgane authored 4 years ago
  
  dd4f0d7e
May 07, 2020
- dealt with hysteresis pb + added features: · 6e2a11eb
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  6e2a11eb
- dealt with hysteresis pb + added features: · a09e72c6
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  a09e72c6
May 05, 2020
- added hist lengths and thickness features · 1a094725
  NADAL Morgane authored 4 years ago
  
  1a094725
May 04, 2020
- pandas df + length in micron + reorganisation of the code · 8b57e569
  NADAL Morgane authored 4 years ago
  
  8b57e569
- pandas df + length in micron + reorganisation of the code · f4675835
  NADAL Morgane authored 4 years ago
  
  f4675835
Apr 30, 2020
- some corrections on features and functions · 45ff36f0
  NADAL Morgane authored 4 years ago
  
  45ff36f0
Apr 29, 2020
- improved extensions lengths hist · 4d255a79
  NADAL Morgane authored 4 years ago
  
  4d255a79
- added extensions lengths hist · d5f543e7
  NADAL Morgane authored 4 years ago
  
  d5f543e7
Apr 28, 2020
- more features on extensions · fd7eee67
  NADAL Morgane authored 4 years ago
  
  fd7eee67
- corrected some features · ca68c425
  NADAL Morgane authored 4 years ago
  
  ca68c425
- added some features · 09ae9de9
  NADAL Morgane authored 4 years ago
  
  09ae9de9
Apr 27, 2020
- some corrections · 57c59876
  NADAL Morgane authored 4 years ago
  
  57c59876
- best fitting ellipsoid for soma points · 174c0f74
  NADAL Morgane authored 4 years ago
  
  174c0f74
- added soma features (volume + working on best fitting ellipsoid axes) +... · 09937e58
  NADAL Morgane authored 4 years ago
  
  added soma features (volume + working on best fitting ellipsoid axes) + modified skl brick.edge algo to support None value for calculus of edge lengths
  09937e58
Apr 24, 2020
- tests frangi time and memory usage + frangi prms · 658a41a1
  NADAL Morgane authored 4 years ago
  
  658a41a1
Apr 23, 2020
- tests frangi time usage · d5cb64d0
  NADAL Morgane authored 4 years ago
  
  d5cb64d0
- changed __slots__ initialization · 306a2ae6
  NADAL Morgane authored 4 years ago
  
  306a2ae6
- changed __slots__ initialization · c2da34ac
  NADAL Morgane authored 4 years ago
  
  c2da34ac
Apr 22, 2020
- some corrections · 15c95e8f
  NADAL Morgane authored 4 years ago
  
  15c95e8f
Apr 20, 2020
- tests frangi3d skimage + python · c8b83d38
  NADAL Morgane authored 4 years ago
  
  c8b83d38
- possibility to use Dijkstra from skimage BUT time x 10 · 905b5135
  NADAL Morgane authored 4 years ago
  
  905b5135
- possibility to use Dijkstra from skimage BUT time x 10 · 3b8807be
  NADAL Morgane authored 4 years ago
  
  3b8807be
Apr 17, 2020
- small corrections · b42d61cc
  NADAL Morgane authored 4 years ago
  
  b42d61cc
- smal correction · 72ba3dea
  NADAL Morgane authored 4 years ago
  
  72ba3dea
Apr 16, 2020
- Graphs constructed - for the moment, use FindRootsWithNodes instead of FindRootsWithEdges · 5da5797f
  NADAL Morgane authored 4 years ago
  
  5da5797f
- annotations and cleansing in nutrimorph.py · 4219ab99
  NADAL Morgane authored 4 years ago
  
  4219ab99
- clean the root search associated-codes · b5fec106
  NADAL Morgane authored 4 years ago
  
  b5fec106
Apr 15, 2020
- added field centroid to soma · 7de498e0
  NADAL Morgane authored 4 years ago
  
  7de498e0
- Find roots - some corrections · 72bdbce1
  NADAL Morgane authored 4 years ago
  
  72bdbce1
Apr 14, 2020
- Find roots · 29d45155
  NADAL Morgane authored 4 years ago
  
  29d45155
Apr 10, 2020

still under dvpt = alternative fct for finding the roots of the graphs · bd45f838

NADAL Morgane authored 4 years ago

issue with the use of ext_nfo['lmp'] solved by deleting 0s during the search of the ext uid with np.where(site>0)
now working on root storage in the graph/edge/node attributes

bd45f838

minor bug solving + still working on graph roots extraction · f33b81f9

NADAL Morgane authored 4 years ago

pb with ext_nfo["lmp"] which do not contain the connexion, making not possible its use for graphs and root extraction

f33b81f9