Commits · 1c3e060142c9681382ebccc9b5f1490ea4fd2b73 · DEBREUVE Eric / NutriMorph

May 14, 2020
- errors correction - graph features extraction completed · 1c3e0601
  NADAL Morgane authored 4 years ago
  
  1c3e0601
May 12, 2020
- errors correction - graph features extraction completed · 8ca33894
  NADAL Morgane authored 4 years ago
  
  8ca33894
May 11, 2020
- curvature and torsion coorection + lengths of edges in micron · cb4c0cbb
  NADAL Morgane authored 4 years ago
  
  cb4c0cbb
- curvature and torsion done · d832a4a9
  NADAL Morgane authored 4 years ago
  
  d832a4a9
May 07, 2020
- dealt with hysteresis pb + added features: · 6e2a11eb
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  6e2a11eb
- dealt with hysteresis pb + added features: · a09e72c6
  NADAL Morgane authored 4 years ago
  
  * ellipsoid axes sorted in croissant order * other parameters adjusted
  a09e72c6
May 05, 2020
- added hist lengths and thickness features · 1a094725
  NADAL Morgane authored 4 years ago
  
  1a094725
May 04, 2020
- pandas df + length in micron + reorganisation of the code · 8b57e569
  NADAL Morgane authored 4 years ago
  
  8b57e569
- pandas df + length in micron + reorganisation of the code · f4675835
  NADAL Morgane authored 4 years ago
  
  f4675835
Apr 30, 2020
- some corrections on features and functions · 45ff36f0
  NADAL Morgane authored 4 years ago
  
  45ff36f0
Apr 29, 2020
- improved extensions lengths hist · 4d255a79
  NADAL Morgane authored 4 years ago
  
  4d255a79
- added extensions lengths hist · d5f543e7
  NADAL Morgane authored 4 years ago
  
  d5f543e7
Apr 28, 2020
- more features on extensions · fd7eee67
  NADAL Morgane authored 4 years ago
  
  fd7eee67
- corrected some features · ca68c425
  NADAL Morgane authored 4 years ago
  
  ca68c425
- added some features · 09ae9de9
  NADAL Morgane authored 4 years ago
  
  09ae9de9
Apr 27, 2020
- some corrections · 57c59876
  NADAL Morgane authored 4 years ago
  
  57c59876
- best fitting ellipsoid for soma points · 174c0f74
  NADAL Morgane authored 4 years ago
  
  174c0f74
- added soma features (volume + working on best fitting ellipsoid axes) +... · 09937e58
  NADAL Morgane authored 4 years ago
  
  added soma features (volume + working on best fitting ellipsoid axes) + modified skl brick.edge algo to support None value for calculus of edge lengths
  09937e58
Apr 24, 2020
- tests frangi time and memory usage + frangi prms · 658a41a1
  NADAL Morgane authored 4 years ago
  
  658a41a1
Apr 23, 2020
- tests frangi time usage · d5cb64d0
  NADAL Morgane authored 4 years ago
  
  d5cb64d0
Apr 22, 2020
- some corrections · 15c95e8f
  NADAL Morgane authored 4 years ago
  
  15c95e8f
Apr 20, 2020
- tests frangi3d skimage + python · c8b83d38
  NADAL Morgane authored 4 years ago
  
  c8b83d38
- possibility to use Dijkstra from skimage BUT time x 10 · 3b8807be
  NADAL Morgane authored 4 years ago
  
  3b8807be
Apr 17, 2020
- small corrections · b42d61cc
  NADAL Morgane authored 4 years ago
  
  b42d61cc
Apr 16, 2020
- Graphs constructed - for the moment, use FindRootsWithNodes instead of FindRootsWithEdges · 5da5797f
  NADAL Morgane authored 4 years ago
  
  5da5797f
- annotations and cleansing in nutrimorph.py · 4219ab99
  NADAL Morgane authored 4 years ago
  
  4219ab99
Apr 15, 2020
- Find roots - some corrections · 72bdbce1
  NADAL Morgane authored 4 years ago
  
  72bdbce1
Apr 14, 2020
- Find roots · 29d45155
  NADAL Morgane authored 4 years ago
  
  29d45155
Apr 10, 2020

still under dvpt = alternative fct for finding the roots of the graphs · bd45f838

NADAL Morgane authored 4 years ago

issue with the use of ext_nfo['lmp'] solved by deleting 0s during the search of the ext uid with np.where(site>0)
now working on root storage in the graph/edge/node attributes

bd45f838

minor bug solving + still working on graph roots extraction · f33b81f9

NADAL Morgane authored 4 years ago

pb with ext_nfo["lmp"] which do not contain the connexion, making not possible its use for graphs and root extraction

f33b81f9

Apr 09, 2020
- small annotations · 54b1d162
  NADAL Morgane authored 4 years ago
  
  54b1d162
- Changed MIP fct (not using SimpleITK anymore) · 801bc197
  NADAL Morgane authored 4 years ago
  
  801bc197
Apr 08, 2020
- Step3 : added the soma and ext id to root node attributes · 856559c7
  NADAL Morgane authored 4 years ago
  
  + nutrimorph.py setting
  856559c7
Apr 07, 2020
- STEP3 = find and label the root extremities of the ext+conn graphs · 698fdeb5
  NADAL Morgane authored 4 years ago
  
  698fdeb5
Apr 06, 2020
- STEP3 = find and label the root extremities of the ext+conn graphs · 882ef02a
  NADAL Morgane authored 4 years ago
  
  882ef02a
- STEP2 = GRAPHS EXTRACTION: use SKL graph to only extract the {ext + conn} as graph · a90ec39c
  NADAL Morgane authored 4 years ago
  
  a90ec39c
Apr 04, 2020
- STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas... · ccebbf37
  NADAL Morgane authored 4 years ago
  
  STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas into ext_root [[coord: tuple{3}, idx: int]]
  ccebbf37
- STEP1 of GRAPH EXTRACTION: Storage of adjacent extensions end points to somas into ext_root · ed98057d
  NADAL Morgane authored 4 years ago
  
  ed98057d
Mar 26, 2020
- right prms for frangi w/ relative intensiy normalization · 81f6e4a0
  NADAL Morgane authored 4 years ago
  
  81f6e4a0
Mar 25, 2020
- adding frangi + README in parameters.ini + ToPixel · 96d784c3
  NADAL Morgane authored 4 years ago
  
  96d784c3