added gfp image

brick/io/screen/soma_validation.py

@@ -17,8 +17,10 @@ class soma_validation_window_t:
         "mip",
         "mip_4_display",
         "root",
+        "canvas_gfp",
         "canvas",
         "cursor_nfo",
+        "tk_image_gfp",
         "tk_image",
         "canvas_image",
     )
@@ -26,13 +28,16 @@ class soma_validation_window_t:
     mip: array_t
     mip_4_display: array_t
     root: tknt.Tk
+    canvas_gfp: tknt.Canvas
     canvas: tknt.Canvas
     cursor_nfo: tknt.Label
+    tk_image_gfp: tk_image_t
     tk_image: tk_image_t
     canvas_image: int
 
     def __init__(
         self,
+        gfp: array_t,
         lmap: array_t,
         mip_axis: int = -1,
         color_version: bool = True,
@@ -41,7 +46,9 @@ class soma_validation_window_t:
         """
         with_cm: "plasma" and "viridis" seem to be good options
         """
-        mip = nmpy.max(lmap, axis=mip_axis)
+        gfp_mip = nmpy.amax(gfp, axis=mip_axis)
+        gfp_mip *= 255.0 / nmpy.amax(gfp_mip)
+        mip = nmpy.amax(lmap, axis=mip_axis)
         if color_version:
             if with_cm is None:
                 mip_4_display = _ColoredVersion(mip)
@@ -51,6 +58,11 @@ class soma_validation_window_t:
             mip_4_display = _ScaledVersion(mip)
 
         root = tknt.Tk()
+
+        canvas_gfp = tknt.Canvas(root, width=gfp_mip.shape[1], height=gfp_mip.shape[0])
+        tk_image_gfp = _TkImageFromNumpyArray(gfp_mip, root)
+        _ = canvas_gfp.create_image(0, 0, anchor="nw", image=tk_image_gfp)
+
         canvas = tknt.Canvas(root, width=mip.shape[1], height=mip.shape[0])
         tk_image = _TkImageFromNumpyArray(mip_4_display, root)
         canvas_image = canvas.create_image(0, 0, anchor="nw", image=tk_image)
@@ -60,6 +72,7 @@ class soma_validation_window_t:
         canvas.bind("<Motion>", self._DisplayLabel)
         canvas.bind("<Button-1>", self._DeleteSoma)
 
+        canvas_gfp.grid(row=0, column=0)
         canvas.grid(row=0, column=1)
         cursor_nfo.grid(row=1, column=0)
         done_button.grid(row=1, column=1)

nutrimorph.py

@@ -226,7 +226,7 @@ def NutriMorph(
     if with_plot:
         fb_.PlotSomas(somas, som_nfo, axes)
     elif interactive:
-        window = smvl.soma_validation_window_t(som_nfo["lmp"], mip_axis=0, with_cm="viridis")
+        window = smvl.soma_validation_window_t(image_for_soma, som_nfo["lmp"], mip_axis=0, with_cm="viridis")
         n_somas = window.LaunchValidation()
         print(f"Validated Somas: {n_somas}")