Created PySide2 Image Verification algo (still some bugs!!)

nutrimorph.py

@@ -184,6 +184,9 @@ dijkstra_costs = in_.DijkstraCosts(image, som_nfo["map"], ext_nfo["map"])
 # -- Soma-Extention
 print("\n--- Soma <-> Extension")
 
+max_straight_sq_dist_c  = in_.ToPixel(max_straight_sq_dist_c, size_voxel_in_micron)
+max_weighted_length_c  = in_.ToPixel(max_weighted_length_c, size_voxel_in_micron)
+
 candidate_conn_nfo = cn_.CandidateConnections(
     somas,
     som_nfo["influence_map"],

parameters.ini

@@ -56,8 +56,8 @@ ext_min_area_c:             0.24050024 * 100
 ;ext_min_area_c:             100  # pixels
 
 [Connexions]
-max_straight_sq_dist_c:     30 ** 2
-max_weighted_length_c:      20.0
+max_straight_sq_dist_c:     (30 ** 2) * 0.24050024
+max_weighted_length_c:      20.0 * 0.24050024
 
 [Program Running]
 with_plot:                  True

parameters.py

@@ -37,16 +37,16 @@ with_plot = False
 
 soma_low_c = 0.15
 soma_high_c = 0.7126
-ext_low_c = 0.2  # 0.02  # 0.2  # ext_low_c = 9.0e-4
-ext_high_c = 0.6  # 0.04  # 0.6  # high_ext = 8.0e-3
+ext_low_c = 3 #1e-7 ##0.2  # 0.02  # 0.2  # ext_low_c = 9.0e-4
+ext_high_c = 1e-10 #1.2e-7 ##0.6  # 0.04  # 0.6  # high_ext = 8.0e-3
 
 # soma_selem_c = mp_.disk(2)
 soma_selem_micron_c = 0.24050024 * 2
 # ext_selem_c = mp_.disk(1)
 ext_selem_micron_c = 0.24050024 * 1
 
-max_straight_sq_dist_c = 30 ** 2
-max_weighted_length_c = 20.0
+max_straight_sq_dist_c = (30 ** 2) * 0.24050024
+max_weighted_length_c = 20.0 * 0.24050024
 
 soma_min_area_c = 1000 * 0.24050024
 ext_min_area_c = 100 * 0.24050024