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# Copyright CNRS/Inria/UNS
# Contributor(s): Eric Debreuve (since 2019), Morgane Nadal (2020)
#
# eric.debreuve@cnrs.fr
#
# This software is governed by the CeCILL license under French law and
# abiding by the rules of distribution of free software. You can use,
# modify and/ or redistribute the software under the terms of the CeCILL
# license as circulated by CEA, CNRS and INRIA at the following URL
# "http://www.cecill.info".
#
# As a counterpart to the access to the source code and rights to copy,
# modify and redistribute granted by the license, users are provided only
# with a limited warranty and the software's author, the holder of the
# economic rights, and the successive licensors have only limited
# liability.
#
# In this respect, the user's attention is drawn to the risks associated
# with loading, using, modifying and/or developing or reproducing the
# software by the user in light of its specific status of free software,
# that may mean that it is complicated to manipulate, and that also
# therefore means that it is reserved for developers and experienced
# professionals having in-depth computer knowledge. Users are therefore
# encouraged to load and test the software's suitability as regards their
# requirements in conditions enabling the security of their systems and/or
# data to be ensured and, more generally, to use and operate it in the
# same conditions as regards security.
#
# The fact that you are presently reading this means that you have had
# knowledge of the CeCILL license and that you accept its terms.
import sys as sstm
from pathlib import Path as path_t
from brick.feature.analysis import Main as Analysis
from brick.io.storage.parameters import NutrimorphArguments
from nutrimorph import _CSV_FEATURE_FILE
def Main():
""""""
if sstm.argv.__len__() < 2:
print("Missing parameter file argument")
sstm.exit(0)
argument = path_t(sstm.argv[1])
if not (argument.is_file() and (argument.suffix.lower() == ".ini")):
print("Wrong parameter file path or type, or parameter file unreadable")
sstm.exit(0)
config = NutrimorphArguments(argument)
(
*_,
input_cfg,
output_cfg,
__,
___,
) = config
base_folder = sorted((output_cfg["save_images"] / input_cfg["data_path"].stem).glob("2023*"))[-1]
output_cfg["save_images"] = base_folder / "image"
output_cfg["save_csv"] = base_folder / "features"
output_cfg["save_features_analysis"] = base_folder / "analysis"
path_1 = output_cfg["save_csv"]
path_2 = output_cfg["save_features_analysis"]
print(base_folder, path_1, path_2, sep="\n")
Analysis(str(path_1 / _CSV_FEATURE_FILE), path_2)
if __name__ == "__main__":
#
Main()