main_prm.py

import skimage.morphology as mp_


data_path = "./DIO_6H_6_1.70bis_2.2_3.tif"
with_plot = False

soma_low_c = 0.15
soma_high_c = 0.7126
ext_low_c = 0.2  # 0.02  # 0.2  # ext_low_c = 9.0e-4
ext_high_c = 0.6  # 0.04  # 0.6  # high_ext = 8.0e-3

soma_selem_c = mp_.disk(2)

max_straight_sq_dist_c = 30 ** 2
max_weighted_length_c = 20.0

min_area_c = 1000