Mentions légales du service
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dnarXiv
Workflow_Commands
Commits
008b1d23
Commit
008b1d23
authored
3 years ago
by
BOULLE Olivier
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wrong script for channel coding
parent
3f3004e5
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dna_add.sh
+1
-1
1 addition, 1 deletion
dna_add.sh
dna_read.sh
+1
-1
1 addition, 1 deletion
dna_read.sh
with
2 additions
and
2 deletions
dna_add.sh
+
1
−
1
View file @
008b1d23
...
@@ -125,7 +125,7 @@ add_doc_param "$container_path" $doc_index "channel_coding" $channel_coding
...
@@ -125,7 +125,7 @@ add_doc_param "$container_path" $doc_index "channel_coding" $channel_coding
if
$channel_coding
if
$channel_coding
then
then
call_function
python3
"
$channel_encoding_script
"
"
$source_path
"
"
$channel_path
"
call_function
julia
"
$channel_encoding_script
"
"
$source_path
"
"
$channel_path
"
else
else
call_function
cp
"
$source_path
"
"
$channel_path
"
call_function
cp
"
$source_path
"
"
$channel_path
"
fi
fi
...
...
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dna_read.sh
+
1
−
1
View file @
008b1d23
...
@@ -212,7 +212,7 @@ then
...
@@ -212,7 +212,7 @@ then
done
done
decoded_fragments_path
=
"
$stored_document_path
"
/9_decoded_fragments.fasta
decoded_fragments_path
=
"
$stored_document_path
"
/9_decoded_fragments.fasta
call_function
python3
"
$channel_decoding_script
"
"
$fragmented_consensus_path
"
$frag_length
"
$decoded_fragments_path
"
"
$container_path
"
/
$document_index
/validity_check.txt
call_function
"
$channel_decoding_script
"
"
$fragmented_consensus_path
"
$frag_length
"
$decoded_fragments_path
"
"
$container_path
"
/
$document_index
/validity_check.txt
#the decoded fragments are reassembled in an unique sequence
#the decoded fragments are reassembled in an unique sequence
#select even lines and delete all \n
#select even lines and delete all \n
...
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