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Created with Raphaël 2.2.07Oct4313Sep10526Aug221912511Jul98413Jun1065330May229Apr29Mar12Feb959Jan518Dec14124128Nov212017161413963231Oct261917161095329Sep1928Jul107Mar63Feb26Jan1068Dec5125Nov18158230Sep272018Aug1698228Jun2321201514324May20171322Apr21191251Mar8Feb25Jan212018144317Dec72126Nov171620Oct1918151386522Sep2016152131Aug302620131128May201126Apr22201615139826Mar25242311116Feb1512318Jan11Dec10827Nov18161095330Oct2827262219151413128improve outputmastermasterinitUpgrade by Florestanremove previous fasta, improve table makinginitécommentrevert mutex testadded comments, removed fixed params, optimise reverse comp usagetest with lock unlocktimer timedecrease score requirement, close filesupdated commentsmoved reverse complement to optimizeprogression printupdate argsupdate argsparrallelised versioncleaned includes and functions, refactoringiniadd the distance to the last cellmore optimisations, cleaning and reorganistation of others functionsadded csvbm streaming, huge opti of minimizers index handlingfix kp filesintegrated kp to the partition runsadded csvbm outputremoved unused importadded option to chose matrix or graph on runmoved functionsinitupdated imports for the dir moveimproved main, add a func to convert minlist to csv matrix, remove empty minimizers linesinit, c++ version of pre metis graph generationreorganisationinitmoved reads shuffling outside matrix class, func to eval proposed soluceinit from csv methodturned matrix functions into a class object, adder comments & refactoringgeneration of coverage listinitinit