Renaud Person authored 3 months ago and Gildas Cambon committed 3 months ago

Resolve "Add make_ini in make_clim_pisces to correct DIC/ALK missing values at bottom in HR configuration"

- Various bug fix
- Update to use the new copernicusmarine toolbox
- Update in Coupling tools

commit 0f718ee9
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Fri Apr 5 17:22:53 2024 +0200

    Update the CHANGELOG.md for croco_tools

commit f3fa5a22
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Thu Apr 4 19:59:02 2024 +0200

    cosmetics for CHANGELOG.md

commit 7f6b1cca
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Thu Apr 4 19:49:24 2024 +0200

    Add CHANGELOG file for release / No more hindcast runs / No more quick forecast plot

commit b7e5f15a
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Wed Apr 3 07:51:45 2024 +0200

    Fix forecast plots in case of onerun=0

commit ad08ec1e
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Tue Apr 2 18:33:03 2024 +0200

    Some correction in cse of iteration of hindcast
    Some correction for plotting

commit caabe214
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Tue Apr 2 18:41:32 2024 +0200

    Modif of Copernicus Documentation

commit fe38bfb5
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Fri Mar 29 20:07:51 2024 +0100

    Fix to load export_fig

commit 0c93881e
Merge: 44a1f9f9 90f28f25
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Fri Mar 29 15:53:46 2024 +0100

    Merge branch 'hotfix_dev_newcopernicus' into dev_newcopernicus

commit 90f28f25
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Fri Mar 29 15:46:42 2024 +0100

    Some cleaning and update on plotting scripts

commit 4742b2c2
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Fri Mar 29 13:54:37 2024 +0100

    Squashed commit of the following:

    commit 44a1f9f9
    Author: gmorvan <guillaume.morvan@ird.fr>
    Date:   Fri Mar 29 12:27:04 2024 +0100

        Tipos / plot forecast fix

commit 44a1f9f9
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Fri Mar 29 12:27:04 2024 +0100

    Tipos / plot forecast fix

commit 37761ede
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Fri Mar 29 12:19:11 2024 +0100

    Small update

commit 6c1d09a9
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Thu Mar 28 19:19:11 2024 +0100

    Some update and typos

commit e15ef6bb
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Thu Mar 28 18:06:20 2024 +0100

    Update crocotools_param

commit 928c1fa1
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Thu Mar 28 17:26:05 2024 +0100

    Modif Doc Copernicus

commit 9d39da47
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Thu Mar 28 17:22:51 2024 +0100

    Tipos / modif depth forecast for mercator

commit 64332e4f
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Wed Mar 27 18:07:49 2024 +0100

    Remove IFS forecast for now...

commit 8c0c9a68
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Wed Mar 27 17:58:20 2024 +0100

    Add ERA5_parallel_request.py:
    Parallelization of the ERA5 request to speed-up the process

commit 81458237
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Mon Mar 25 12:15:15 2024 +0100

    Cleaning forecast scripts (mercator/GFS) / IFS forecast now available (transfer by wget/ conversion to nc by cdo) with make_IFS.m

commit 26798499
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Tue Mar 19 17:53:18 2024 +0100

    Squashed commit of the following:

    commit a861c34b
    Author: Gildas Cambon <gildas.cambon@ird.fr>
    Date:   Tue Mar 19 17:11:51 2024 +0100

        Refactorisation : use of write_mercator_multi.m
        instead of write_mercator_frcst.m

    commit 747149f7
    Author: Gildas Cambon <gildas.cambon@ird.fr>
    Date:   Tue Mar 19 15:18:50 2024 +0100

        Cleaning

    commit 0dc67715
    Author: Gildas Cambon <gildas.cambon@ird.fr>
    Date:   Tue Mar 19 14:29:18 2024 +0100

        Update in download_mercator_frcst_python

    commit f5c9aadd
    Author: Gildas Cambon <gildas.cambon@ird.fr>
    Date:   Mon Mar 18 14:33:52 2024 +0100

        Cleaning in make_OGCM_frcst
            - Rename make_OGCM_frcst.m  in make_OGCM_mercator_frcst.m
            - some simplifications

    commit 90a6ebc1
    Author: Gildas Cambon <gildas.cambon@ird.fr>
    Date:   Mon Mar 18 14:20:30 2024 +0100

        Remove ECCO product from Forecast_tools

    commit 5040ce6c
    Author: Gildas Cambon <gildas.cambon@ird.fr>
    Date:   Mon Mar 18 14:17:33 2024 +0100

        Remove original file "raw_mercator_name" after download

    commit a1fae6b9
    Author: Gildas Cambon <gildas.cambon@ird.fr>
    Date:   Mon Mar 18 14:11:52 2024 +0100

        Remove downloading of taux/tauy in extract_SODA

    commit 76fc422b
    Author: Gildas Cambon <gildas.cambon@ird.fr>
    Date:   Mon Mar 18 14:04:31 2024 +0100

        In Preprocessing_tools, during geostrophic calculation,
        add the Ekman transport only of forcing file (containing wind strss) exists

commit 37e88f21
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Mon Mar 18 19:42:07 2024 +0100

    Add WKB based on ERA5 waves - Time management on Forecast tools - Scripts for forecasts - script for download Glorys - Cleaning

commit 9816b9c6
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Thu Mar 14 16:12:25 2024 +0100

    Cleaning in interanual oceanic reanalysis preprocessing
    - remove ECCO reference
    - remove duplicated routines

commit dd582f17
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Thu Mar 14 15:37:47 2024 +0100

    Remove wrong check for lonp_parent
    fixe issues #15

commit b2b67bf3
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Thu Mar 14 15:25:55 2024 +0100

    Update in variable name for vertical coodinate :
    sc_r, sc_w, Cs_r and Cs_rho are changed to s_rho, s_w, Cs_rho and Cs_w  to be consistent with croco outputs.
    It should not have side effect.
    Change are in Preprocessing_tools/ and Nesting_tools/

commit 6762c94b
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Thu Mar 14 11:36:05 2024 +0100

    Still some typos

commit 5e5161fb
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Tue Mar 12 13:22:54 2024 +0100

    Clean and tipos

commit 9be27745
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Thu Mar 7 18:40:56 2024 +0100

    Fix for ERA5 waves preprocessing

commit 79ed182e
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Thu Mar 7 18:30:17 2024 +0100

    Add some tipos, client installation instructions

commit 00fb04ac
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Thu Mar 7 13:48:37 2024 +0100

    Add environment file for CMT installation

commit e5d121cc
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Thu Mar 7 13:40:10 2024 +0100

    Cleaning Forecasts_tools with mercator products / typos

commit 28d928a9
Author: gmorvan <guillaume.morvan@ird.fr>
Date:   Thu Feb 29 09:48:40 2024 +0100

    Set of changes to deal with copernicus marine client / clean Forecasts_tools / typos

commit b3be7236
Author: Gildas Cambon <gildas.cambon@ird.fr>
Date:   Fri Feb 23 17:57:53 2024 +0100

    First commits for the dev_newcopernicus branch

- Small cleaning in routines (indentation)
- Add the capability to add the tidal forcing into the forcing files (eg
croco_frc_ECMWF_YxxxxMxx.nc)
- Add global attribute with :
     - the origin date (origin_date) used for the time of the oceanic forcing (ini, bry, clm files) and the atmospheric forcing (frc, blk)
     - the name of the product (product) used to create the oceanic frocing (SODA, ECCO, mercator, ...) or atmospheric forcing (CFSR, ERAI, ERA5, QSCAT, ...)

Miscellaneous:
-------------
- Add comments in Tides/make_tides_interannual.m
- Switch dl=1 to dl=2 in extr_tracers_ini.m to be consistent with ext_tracers.m
	modifié :         Aforc_CFSR/make_CFSR.m
	modifié :         Aforc_ECMWF/make_ECMWF.m
	modifié :         Aforc_ECMWF/make_ECMWF_daily.m
	modifié :         Aforc_ERA5/make_ERA5.m
	modifié :         Aforc_QuikSCAT/make_QSCAT_daily.m
	modifié :         Oforc_OGCM/make_OGCM.m
	modifié :         Oforc_OGCM/make_OGCM_mercator.m
	modifié :         Preprocessing_tools/ext_tracers_ini.m
	nouveau fichier : Preprocessing_tools/nc_add_globatt.m
	modifié :         Tides/make_tides_interannual.m

Again ... Still cleaning to put routines for preprocessing bgc (npzd,
bioebus, pisces) input files into a subdirectory Bio of Preprocessing_tools/

Still cleaning to put routines for preprocessing bgc (npzd, bioebus,
pisces) input files into a
subdirectory Bio of Preprocessing_tools/

- put all the routines for processing climatological input
needed by biogeochemical models into Preprocessing_tools/Bio
- adapt start.m and oct_satrt.m accordingly

- Reindentation
- cleaning and comment some tests not working

Filename equal to function name

Update the Oforc_OGCM:
- add capability as in Forecast tools to process GLORYS12 reanalysis using opendap extraction with the python motuclient
	=> master file is make_OGCM_mercator.m
- do some cleaning for the various OGCM case  ( function name, remoe doublons, etc...)
- add some info