Merge branch '61-prepare-release' into 'master'

Release 2.1.0

Closes #61

See merge request !24

CHANGELOG.md

 # Changelog
 
-Release changelog are available here : https://gitlab.inria.fr/croco-ocean/croco_tools/-/releases
+Release changelog are available here :
+https://gitlab.inria.fr/croco-ocean/croco_tools/-/releases
 
-## [x.x.x] - xxxx-xx-xx
+## [2.1.0] - 2025-03-21
 
 ### Added
 
-- Issue 57 : update croco_frcbio creation with make_dust.m and make_ndepo.m (Thanks to C. Ethee and R. Person)
+- Update croco_frcbio.nc creation with make_dust.m and make_ndepo.m (Issue #57)
+- Add standard time unit, cycle_length and calendar attribute name
+  into input files (Issue #51)
+- Add GSHHS coastline dataset in m_map private directory (Issue #49, Issue #43)
 
+### Fixed
 
-## Fixed
+- Fix overlaps problems with mercator daily and monthly forcing
+  starting the first days of the month at 00:00h (Issue #60)
+- Fix for biogeochemistry into nestgui
+    (interp_ini,interp_frcbio, interp_clim) (Issue #59)
+- Fix propagation of time unit, cycle_length and calendar attribute updates (#51)
+- Fix and clean indent in croco_tools (Issue #51)
+- Fix in mexcdf functionality for matlab 20xx versions (in
+  particular matlab 2024) (Issue #50)
+- Fix problem in editmask with longitude in 0-360° convention (Issue #44, Issue #28)
+- Fix redef and endef issue in Nesting tools + some cleaning in
+  nestgui (Issue #34)
+- Fix make_ERA5 with add_tides and add_waves (Issue #55)
+- Fix copernicus marine toolbox python environnement (Issue #38)
+- Fix datasets names used with copernicus marine toolbox for the 
+  MERCATOR glorys reanalysis (Issue #26)
+- Fix ERA5 format changes (Issue #32)
 
-- Issue 60 : fix overlaps problems with mercator daily and monthly forcing starting the first days of the month at 00:00h
-- Issue 59 : 
-  - propagate time unit, cycle_length and calendar attribute updates
-  - updates and fixes for bio into nestgui (interp_ini, interp_frcbio, interp_clim) 
 
-- Issue 51 :
-  - various fixes, cleaning and indentation in croco_tools
-  - add time unit, cycle_length and calendar attribute update
-  - refactorization for time unit, cycle_length and calendar attributea
+### Changed
 
-- Issue 50 : fix in mexcdf functionality for matlab 20xx versions (in particular matlab 2024)
-- Issue 49, 43 : add GSHHS coastline dataset in m_map private directory
-- Issue 44 : fix problem in editmask with longitude in 0-360° convention
-- Issue 34 : fix redef and endef issue in Nesting tools + some cleaning in nestgui
+- Move npzd and bioebus scripts into a dedicated directory :
+  Preprocessing/Bio/npzd-bioebus (Issue #58)
+- Change datasets used for npzd-bioebus inputs file (Issue #58)
 
-## Changed
+### Removed
 
-- Issue 58 : cleaning and update in Preprocessing_tools/Bio
- 
-## Removed
+- Remove creation of croco_ini.nc using make_clim.m to avoid
+  confusion (also in Preprocessing/Bio) (Issue #58)
 
 ### Deprecated
 
+/
+
 ### Other
 
+/
+
+### Contributors on this release
+
+- Contributors already on board :  
+  Gildas Cambon, Christian Ethé, Swen Jullien, Solène Le Gac, Patrick
+  Marchesiello, Camille Mazoyer, Guillaume Morvan, Renaud Person
+
+- New contributors :  
+  Aline Zribi

README.md

-CROCO_TOOLS
------------
+# CROCO_TOOLS - RELEASE 2.1.0
 
-CROCO preprocessing tools, CROCO_TOOLS, have been developed under Matlab software by IRD researchers (former Roms_tools). Note: These tools have been made to build easily regional configurations using climatological data. To use interannual data, some facilities are available (ERA5, ERA-Interim, NCEP, CFSR, QuickScat data for atmospheric forcing, GLORYS, SODA and ECCO for lateral boundaries). However, to use other data, you will need to adapt the scripts. All utilities/toolbox requested for matlab crocotools programs are provided within the UTILITIES directory, or can be downloaded at https://www.croco-ocean.org in the Download section.
-
-More informations on the croco website at 
-https://www.croco-ocean.org
-
-CROCO_TOOLS documentation is available at 
-https://croco-ocean.gitlabpages.inria.fr/croco_doc 
-
-and more specifically at 
-https://croco-ocean.gitlabpages.inria.fr/croco_doc/tutos
-
-Remember you can also subscribe at CROCO forum at 
-https://forum.croco-ocean.org
+CROCO preprocessing tools, CROCO_TOOLS, have been developed under Matlab
+software by IRD researchers (former Roms_tools). Note: These tools have been
+made to build easily regional configurations using climatological data. To use
+interannual data, some facilities are available (ERA5, ERA-Interim, NCEP, CFSR,
+QuickScat data for atmospheric forcing, GLORYS, SODA and ECCO for lateral
+boundaries). However, to use other data, you will need to adapt the scripts. All
+utilities/toolbox requested for matlab crocotools programs are provided within
+the UTILITIES directory, or can be downloaded at https://www.croco-ocean.org in
+the Download section.
 
+More informations on the croco website at https://www.croco-ocean.org
 
+We provide separate DOIs (Digital Object Identifier) for the static versions of
+the code at https://doi.org/10.5281/zenodo.7431960
 
+CROCO_TOOLS documentation is available at
+https://croco-ocean.gitlabpages.inria.fr/croco_doc
 
+and more specifically at
+https://croco-ocean.gitlabpages.inria.fr/croco_doc/tutos
 
+You can also subscribe at CROCO forum at https://forum.croco-ocean.org