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ENH: change type of node indices from float to int

FRIGO Matteo requested to merge mfrigo/wlalign:fix-script into master

Node indices should be integers. Before this commit, the wl_align function from the wlalign.alignment submodule treated node indices as floats. With this commit, node indices are now treated as integers.

This commit also changes the format in which they are saved by the wlalign script.

A minor documentation issue is now fixed in the readme.

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