10:40:46,960 INFO RunOneAbstractionServlet:42 - doPost called with parameter null
10:40:46,960 INFO RunOneAbstractionServlet:49 - Run Abstraction in a2 of data source 1 and eMax = 6
10:40:46,967 WARN ConnectionLens:241 - ERROR: database "cl_a2" already exists
10:40:47,815 INFO AbstractSequenceClassifier:88 - Loading classifier from /Users/nelly/Documents/boulot/theseNelly/connection-studio/connection-studio-dir/treetagger/models/english.all.3class.distsim.crf.ser.gz ... done [0.8 sec].
10:40:47,815 INFO NERExtractorFamily:205 - Batch size: 1
10:40:47,815 INFO CacheExtractor:82 - Created Cache(SNER) of size 100000 in memory and with unbounded cache on disk, locale: en
10:40:47,816 INFO ConnectionLens:192 - Creating graph from pre-existing catalog
10:40:47,816 INFO RelationalGraph:624 - Indexing model: POSTGRES_FULLTEXT
10:40:47,816 INFO PostgresFullTextIndex:107 - max_matches_per_kwd: -1
10:40:47,817 INFO RelationalGraph:624 - Indexing model: POSTGRES_FULLTEXT
10:40:47,817 INFO PostgresFullTextIndex:107 - max_matches_per_kwd: -1
10:40:47,818 INFO Abstra:241 - in init
10:40:47,818 INFO Abstra:254 - map existing inputs
10:40:47,818 INFO Abstra:349 - ds: 1
10:40:47,818 INFO RelationalGraph:624 - Indexing model: POSTGRES_FULLTEXT
10:40:47,819 INFO PostgresFullTextIndex:107 - max_matches_per_kwd: -1
10:40:47,819 INFO Abstra:265 - resetAll is: false
10:40:47,819 INFO Abstra:365 - resetAll is: false
10:40:47,819 INFO Abstra:372 - [RDF(1,file:/Applications/apache-tomcat-9.0.41/webapps/webservices/WEB-INF/uploads/conferences.nt)]
10:40:47,819 INFO RelationalGraph:624 - Indexing model: POSTGRES_FULLTEXT
10:40:47,820 INFO PostgresFullTextIndex:107 - max_matches_per_kwd: -1
10:40:47,833 INFO Abstra:427 - [RDF(1,file:/Applications/apache-tomcat-9.0.41/webapps/webservices/WEB-INF/uploads/conferences.nt)]
10:40:47,848 INFO CollectionGraphBuilding:115 - -------------
10:40:47,848 INFO CollectionGraphBuilding:116 - Summarization
10:40:47,848 INFO CollectionGraphBuilding:117 - -------------
10:40:47,848 INFO CliqueSummary:74 - ... compute the RDFQuotient summary
10:40:47,848 INFO CliqueSummary:93 - ... run RDFQuotient
10:40:47,849 INFO Interface:334 - START load
********************************************************************************
10:40:47,849 INFO Interface:60 - START currentDateTime
10:40:47,850 INFO Interface:62 - END currentDateTime
20 February 2024 at 10:40:47 CET
Executing the load operation using rdfq_cl_a2 database with saturation disabled
********************************************************************************
10:40:47,850 INFO Interface:67 - START checkIfDatabaseServerIsRunning
10:40:47,855 INFO Interface:109 - END checkIfDatabaseServerIsRunning
10:40:47,856 INFO Interface:377 - Loading graph to database
10:40:47,857 INFO DataLoading:206 - Creating database rdfq_cl_a2 and loading triples
10:40:47,868 INFO LoadTriplesToDatabase:122 - Creating (or dropping and re-creating) database
10:40:47,868 INFO LoadTriplesToDatabase:161 - Database rdfq_cl_a2 exists
10:40:47,902 INFO LoadTriplesToDatabase:126 - Database rdfq_cl_a2 dropped
10:40:47,976 INFO LoadTriplesToDatabase:128 - Database rdfq_cl_a2 created
10:40:47,996 INFO DataLoading:209 - Data loaded
10:40:47,996 INFO DataLoading:218 - Encoding dictionary and encoded triples
10:40:48,001 INFO RDFGraphDictionaryEncoder:213 - Creating dictionary table
10:40:48,018 INFO RDFGraphDictionaryEncoder:219 - Dictionary table created
10:40:48,018 INFO RDFGraphDictionaryEncoder:221 - Populating dictionary table
10:40:48,020 INFO RDFGraphDictionaryEncoder:232 - Dictionary table populated
10:40:48,020 INFO RDFGraphDictionaryEncoder:234 - Creating dictionary indexes
10:40:48,023 INFO RDFGraphDictionaryEncoder:240 - Dictionary indexes created
10:40:48,023 INFO RDFGraphDictionaryEncoder:173 - Creating encoded triples table
10:40:48,024 INFO RDFGraphDictionaryEncoder:179 - Encoded triples table created
10:40:48,024 INFO RDFGraphDictionaryEncoder:182 - Analyze tables
10:40:48,024 INFO DatabaseHandler:121 - ANALYZE triples
10:40:48,025 INFO DatabaseHandler:125 - ANALYZE encoded_triples
10:40:48,026 INFO DatabaseHandler:129 - ANALYZE dictionary
10:40:48,027 INFO RDFGraphDictionaryEncoder:184 - Tables analyzed
10:40:48,027 INFO RDFGraphDictionaryEncoder:186 - Populating encoded triples table
10:40:48,028 INFO RDFGraphDictionaryEncoder:196 - Encoded triples table populated
10:40:48,028 INFO RDFGraphDictionaryEncoder:198 - Creating encoded triples indexes
10:40:48,039 INFO RDFGraphDictionaryEncoder:204 - Encoded triples indexes created
10:40:48,039 INFO DataLoading:220 - Dictionary encoded and encoded triples created
10:40:48,040 INFO DataLoading:221 - Encoding constraint into dictionary
10:40:48,060 INFO DataLoading:247 - Running ANALYZE
10:40:48,182 INFO DataLoading:249 - ANALYZE finished
10:40:48,182 INFO DataLoading:251 - Everything done
10:40:48,182 INFO Interface:379 - Graph loaded to database
10:40:48,182 INFO Interface:387 - Exporting loading statistics to disk
10:40:48,182 INFO Interface:268 - START exportLoadingStatisticsToDisk
10:40:48,182 INFO Interface:253 - START trimExtension
10:40:48,183 INFO Interface:259 - END trimExtension
10:40:48,183 INFO Interface:271 - Loading statistics written to file /Applications/apache-tomcat-9.0.41/webapps/webservices/WEB-INF/uploads/conferences-loading-statistics.csv
10:40:48,183 INFO Interface:283 - END exportLoadingStatisticsToDisk
10:40:48,183 INFO Interface:389 - Loading statistics exported to disk
10:40:48,183 INFO Interface:404 - END load
10:40:48,183 INFO Interface:532 - START summarize
10:40:48,184 INFO Interface:408 - START checkConsistencyOfSummarizationProperties
10:40:48,184 INFO Interface:447 - END checkConsistencyOfSummarizationProperties
********************************************************************************
10:40:48,184 INFO Interface:60 - START currentDateTime
10:40:48,184 INFO Interface:62 - END currentDateTime
20 February 2024 at 10:40:48 CET
Executing the summarize operation using rdfq_cl_a2 database, computing typedstrong summary with type generalization, on not saturated graph, no input RDF graph drawing, drawing summary visualizations with DOT in split_and_fold_leaves layout
********************************************************************************
10:40:48,184 INFO Interface:592 - Summarizing graph from Postgres
10:40:48,184 INFO Interface:452 - START createNewSummary
10:40:48,184 INFO Interface:168 - START getOrEstablishNewDatabaseConnection
10:40:48,184 INFO Interface:121 - START setUpDatabaseConnection
10:40:48,184 INFO Interface:137 - jdbc:postgresql://localhost:5432/rdfq_cl_a2?user=kwsearch&password=%27%27
10:40:48,194 INFO Interface:150 - Connection to Postgres established with URL: jdbc:postgresql://localhost:5432/rdfq_cl_a2?user=kwsearch&password=%27%27
10:40:48,194 INFO Interface:156 - END setUpDatabaseConnection
10:40:48,194 INFO Interface:172 - END getOrEstablishNewDatabaseConnection
10:40:48,203 INFO RDF2SQLEncoding:296 - dropUserTriplesTable
10:40:48,204 INFO RDF2SQLEncoding:308 - dropEncodedUserTriplesTable
10:40:48,205 INFO Traverser:225 - will start most general type pass
10:40:48,205 INFO Summary:519 - dictionaryTableName = dictionary
10:40:48,205 INFO Summary:520 - defaultTypeURI = <http://www.w3.org/1999/02/22-rdf-syntax-ns#type>
10:40:48,205 INFO Summary:521 - variantTypeURIs = [Ljava.lang.String;@6adea34a
10:40:48,207 INFO Summary:524 - Computing most general types
10:40:48,209 INFO Traverser:414 - Starting final pass on 0 generic property triples
10:40:48,209 INFO TypeFirstTraverser:99 - Summarized 182 input triples, created summary of size 13 triples overall in 12 ms
10:40:48,209 INFO Interface:613 - Graph from Postgres summarized
10:40:48,209 INFO Interface:625 - Exporting summary to database
10:40:48,209 INFO Summary:1133 - Exporting the TypedStrongSummary representation function to database in table: summary_ts_rep
10:40:48,210 INFO Summary:1134 - Exporting the TypedStrongSummary node statistics to database in table: summary_ts_nodeStats
10:40:48,210 INFO Summary:1135 - Exporting the TypedStrongSummary edges with statistics to database in table: summary_ts_edges
10:40:48,227 INFO Summary:1021 - Representation function exported in 17 ms
10:40:48,232 INFO Summary:1056 - Exported 13 node statistics in 4 ms
10:40:48,236 INFO Summary:1098 - Exported 13 summary edges in 4 ms
10:40:48,239 INFO Interface:629 - Summary exported to database
10:40:48,239 INFO Summary:1185 - representation_function.nt
10:40:48,241 INFO SummaryExport:94 - Exporting the SummaryExport representation function to disk to the file /Applications/apache-tomcat-9.0.41/webapps/webservices/WEB-INF/uploads/summariesNT/representation_function.nt
10:40:48,251 INFO SummaryExport:119 - The SummaryExport representation function exported to disk to the file /Applications/apache-tomcat-9.0.41/webapps/webservices/WEB-INF/uploads/summariesNT/representation_function.nt
10:40:48,251 INFO Summary:1193 - node_statistics.nt
10:40:48,252 INFO SummaryExport:128 - Exporting the SummaryExport node statistics to disk to the file /Applications/apache-tomcat-9.0.41/webapps/webservices/WEB-INF/uploads/summariesNT/node_statistics.nt
10:40:48,253 INFO SummaryExport:156 - TheSummaryExport node statistics exported to disk to the file /Applications/apache-tomcat-9.0.41/webapps/webservices/WEB-INF/uploads/summariesNT/node_statistics.nt
10:40:48,254 INFO SummaryExport:163 - Exporting the SummaryExport edge statistics to disk to the file /Applications/apache-tomcat-9.0.41/webapps/webservices/WEB-INF/uploads/summariesNT/edge_statistics.nt
10:40:48,256 INFO SummaryExport:179 - The SummaryExport edge statistics exported to disk to the file /Applications/apache-tomcat-9.0.41/webapps/webservices/WEB-INF/uploads/summariesNT/edge_statistics.nt
10:40:48,256 INFO Interface:660 - Exporting summary DOT drawing to disk
10:40:48,256 INFO Summary:318 - Building indexes on repTable
10:40:48,259 INFO Summary:343 - Indexes built successfully
10:40:48,259 INFO Interface:253 - START trimExtension
10:40:48,259 INFO Interface:259 - END trimExtension
10:40:48,259 INFO Interface:253 - START trimExtension
10:40:48,259 INFO Interface:259 - END trimExtension
org.postgresql.util.PSQLException: This connection has been closed.
at org.postgresql.jdbc.PgConnection.checkClosed(PgConnection.java:907)
at org.postgresql.jdbc.PgConnection.getAutoCommit(PgConnection.java:867)
at org.postgresql.jdbc.PgStatement.executeInternal(PgStatement.java:457)
at org.postgresql.jdbc.PgStatement.execute(PgStatement.java:413)
at org.postgresql.jdbc.PgPreparedStatement.executeWithFlags(PgPreparedStatement.java:190)
at org.postgresql.jdbc.PgPreparedStatement.executeQuery(PgPreparedStatement.java:134)
at fr.inria.cedar.RDFQuotient.export.SummaryExport.getRepresentedByThisLeaf(SummaryExport.java:687)
at fr.inria.cedar.RDFQuotient.export.SummaryExport.writeSummaryToDOTFileSplitAndFoldLeaves(SummaryExport.java:960)
at fr.inria.cedar.RDFQuotient.Summary.writeDecodedSummaryToDOTFile(Summary.java:1278)
at fr.inria.cedar.RDFQuotient.controller.Interface.summarize(Interface.java:663)
at fr.inria.cedar.abstra.abstraction.collectiongraph.CliqueSummary.runRdfQuotient(CliqueSummary.java:214)
at fr.inria.cedar.abstra.abstraction.collectiongraph.CliqueSummary.computeTypeAndPropertyEquivalence(CliqueSummary.java:94)
at fr.inria.cedar.abstra.abstraction.collectiongraph.CliqueSummary.summarize(CliqueSummary.java:66)
at fr.inria.cedar.abstra.abstraction.collectiongraph.CollectionGraphBuilding.run(CollectionGraphBuilding.java:131)
at fr.inria.cedar.abstra.Abstra.runAbstraction(Abstra.java:435)
at fr.inria.cedar.connectionstudio.webservices.abstra.RunOneAbstractionServlet.process(RunOneAbstractionServlet.java:56)
at fr.inria.cedar.connectionstudio.webservices.abstra.RunOneAbstractionServlet.doPost(RunOneAbstractionServlet.java:77)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:652)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:733)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at fr.inria.cedar.connectionstudio.webservices.connectionlens.util.AppCorsFilter.doFilter(AppCorsFilter.java:60)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:109)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:202)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:542)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:143)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:690)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343)
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:374)
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:888)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1597)
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Thread.java:834)
10:40:48,261 INFO RunOneAbstractionServlet:67 - ERROR java.lang.IllegalStateException: Unable to get the representation counts
java.lang.IllegalStateException: java.lang.IllegalStateException: Unable to get the representation counts
at fr.inria.cedar.abstra.abstraction.collectiongraph.CliqueSummary.runRdfQuotient(CliqueSummary.java:216)
at fr.inria.cedar.abstra.abstraction.collectiongraph.CliqueSummary.computeTypeAndPropertyEquivalence(CliqueSummary.java:94)
at fr.inria.cedar.abstra.abstraction.collectiongraph.CliqueSummary.summarize(CliqueSummary.java:66)
at fr.inria.cedar.abstra.abstraction.collectiongraph.CollectionGraphBuilding.run(CollectionGraphBuilding.java:131)
at fr.inria.cedar.abstra.Abstra.runAbstraction(Abstra.java:435)
at fr.inria.cedar.connectionstudio.webservices.abstra.RunOneAbstractionServlet.process(RunOneAbstractionServlet.java:56)
at fr.inria.cedar.connectionstudio.webservices.abstra.RunOneAbstractionServlet.doPost(RunOneAbstractionServlet.java:77)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:652)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:733)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:231)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.tomcat.websocket.server.WsFilter.doFilter(WsFilter.java:53)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at fr.inria.cedar.connectionstudio.webservices.connectionlens.util.AppCorsFilter.doFilter(AppCorsFilter.java:60)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.catalina.filters.SetCharacterEncodingFilter.doFilter(SetCharacterEncodingFilter.java:109)
at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:193)
at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:166)
at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:202)
at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:97)
at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:542)
at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:143)
at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:92)
at org.apache.catalina.valves.AbstractAccessLogValve.invoke(AbstractAccessLogValve.java:690)
at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:78)
at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:343)
at org.apache.coyote.http11.Http11Processor.service(Http11Processor.java:374)
at org.apache.coyote.AbstractProcessorLight.process(AbstractProcessorLight.java:65)
at org.apache.coyote.AbstractProtocol$ConnectionHandler.process(AbstractProtocol.java:888)
at org.apache.tomcat.util.net.NioEndpoint$SocketProcessor.doRun(NioEndpoint.java:1597)
at org.apache.tomcat.util.net.SocketProcessorBase.run(SocketProcessorBase.java:49)
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128)
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628)
at org.apache.tomcat.util.threads.TaskThread$WrappingRunnable.run(TaskThread.java:61)
at java.base/java.lang.Thread.run(Thread.java:834)
Caused by: java.lang.IllegalStateException: Unable to get the representation counts
at fr.inria.cedar.RDFQuotient.export.SummaryExport.getRepresentedByThisLeaf(SummaryExport.java:695)
at fr.inria.cedar.RDFQuotient.export.SummaryExport.writeSummaryToDOTFileSplitAndFoldLeaves(SummaryExport.java:960)
at fr.inria.cedar.RDFQuotient.Summary.writeDecodedSummaryToDOTFile(Summary.java:1278)
at fr.inria.cedar.RDFQuotient.controller.Interface.summarize(Interface.java:663)
at fr.inria.cedar.abstra.abstraction.collectiongraph.CliqueSummary.runRdfQuotient(CliqueSummary.java:214)
... 36 more