program is slow with specification
For one community of size 100, the comuptation time would be around 3minutes. After 9 minutes, no results files were produced and the process clingo not activated (see photo)
Run on ODH.
cocomico specification --spec ../Benchmarks/data/gut/community/gut_size_100.json --seeds-file common_seed.sbml --output ../Benchmarks/data/gut/ccmc_v3_com_100 --sbml-dir "../Benchmarks/data/gut/sbml/" --csv-output ../Benchmarks/data/gut/ccmc_v3_com_100/recap.csv
specification files can be obtained with:
wget https://zenodo.org/record/7551375/files/gut.tgz?download=1
It contains sbml file and the community json file.
then unzip sbml files,
tar zxvf gut.tgz\?download\=1