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  • 2.3.12

    1fb8c623 · Merge branch 'release/2.3.12' · 
    - fusion.py: correction for hierarchical fusion. There was an error in the choice
  of the reference image for the final resampling
- enrich documentation

  • 2.3.11

    e314bc8d · Merge branch 'release/2.3.11' · 
    - mars.py: correction for images with more than 32767 labels/cells

  • 2.3.10

    582ab896 · Merge branch 'release/2.3.10' · 
    - ioproperties.py: adjust verboseness level
- diagnosis.py: enrich and adjust diagnosis outputs; adjust verboseness level

  • 2.3.9

    cc55159d · release 2.3.9 · 
    ioproperties.py: update some property/morphonet file names

  • 2.3.8

    6e26959a · release 2.3.8 · 
    - manualcorrection.py: bug corrections in change file reading (case of time interval)

  • 2.3.7

    0a031e8e · release 2.3.7 · 
    - Update documentation
- Update morphonet related property names issued from naming propagation (ascidian package)
  - naming_agreement:
  - naming_score:
  - naming_unequal_division_flag:
  - renaming_flag:
- Correct _erode_cell() in astec.py. scipy.ndimage.find_objects() no more accepts ndarray of
  booleans (issued from binary_erosion()) as input

  • 2.3.6

    bf34a99f · release 2.3.6 · 
    Update documentation

  • 2.3.5

    e4c33e0e · release 2.3.5 · 
    allows backward segmentation propagation with :python:`delta_time_point = -1`

  • 2.3.4

    a34ea0d7 · release 2.3.4 · 
    - refactoring properties mangement; better management of IO properties
- correct numpy induced behavior (np.frombuffer yields a non-writable/mutable numpy array)

  • 2.3.3

    fc920c6b · release 2.3.3 · 
    - remove calls to numpy.fromstring, now deprecated
- remove python 3.9 to build

  • 2.3.2

    043890ad · release 2.3.2 · 
    add python 3.12 to build

  • 2.3.1

    5419ed5b · release 2.3.1 · 
    add name_choice_score to embryo properties

  • 2.3.0

    4be1c439 · release 2.3.0 · 
    - change management of auxiliary and transformation directories
- allows to keep auxiliary directories with parameter `keep_temporary_files`
- refactoring of fusion
- fusion: add 'border' cropping method for acquisition with missing slices
- fusion: initialize translation with object center of mass
- fusion: enable hierachical fusion for drift compensated fusion

  • 2.2.13

    0f8d4d7f · release 2.2.13 · 
    - correct incoherencies between diagnosis.py and keydictionary in ioproperties.py.
- fusion: correction of T_init transformation in _fusion_process().
  Crucial when reference image is not the left camera of stack #0, especially when cropping is disabled.
- migration numpy.tostring() -> numpy.tobytes() for images (metaimage, inrimage) I/O

  • 2.2.12

    c1007d7d · release 2.2.12 · 
    fixes configuration files (continued)

  • 2.2.11

    aaec2405 · release 2.2.11 · 
    fixes yaml files

  • 2.2.10

    dd504e51 · release 2.2.10 · 
    - enrich properties. Add embryo-related properties as weel as time alignment properties
- fusion: better management of acquisition file names
- manualcorrection: enrich tests

  • 2.2.9

    44f16a15 · release 2.2.9 · 
    - fusion: change default weighting scheme
- enrich morphonet outputs

  • 2.2.8

    495bba08 · release 2.2.8 · 
    fusion: correction of guignard's weight computation wrt numpy2.x releases.

  • 2.2.7

    08eca491 · release 2.2.7 · 
    manualcorrection: code refactoring; try to keep the same cell labels when
propagating a new/created division; if the creation of a new division is
not possible, allow to postpone it for a few time points.