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2.1.1
- documentation updating - correct bad behavior of ReconstructionParameters.is_normalization_equal() when intensity_transformation is None
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2.1.0
- documentation updating - pursued code splitting into astec/ascidian repositories - documentation splitting into astec/ascidian
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2.0.0
version 2.0.0 - moved ascidian algorithms/binaries to a dedicated git repository - replaced pkg_resources by importlib.metadata - added test infrastructure - refactor setup.py (adding setup.cfg)
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1.7.2
version 1.7.2 - review of conda env files (*.yaml) and build - use bultin which command instead of external process to launch astec binaries - removed obsolete python-3.7 builds, added python-3.10 and python-3.11
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1.7.1
version 1.7.1 - Write embryo as a graph - Computation of symmetric cells - Allows to extract any XZ-section(s) at the fusion stage.
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1.7.0
- Fusion of one single time point: allows longer suffixes than recognized image extensions. - Pre-processed images are no more stored into ``.../SEG/SEG_XXX/RECONSTRUCTION/`` but in their own directories ``.../REC-MEMBRANE/REC_XXX/`` and/or ``.../REC-SEED/REC_XXX/`` and/or ``.../REC-MORPHOSNAKE/REC_XXX/``. They can be transformed by the motion compensation stage. - User-provided outer contour images (to be stored in ``.../CONTOUR_/CONTOUR_XXX/``) can be used in image pre-processing. - Properties computation computes cell lineage when it is not available.
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1.6.1
fusion: morphological opening of the MIP image to crop the acquisition data
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1.6.0
- write/update documentation for astec_atlas_init_naming and astec_atlas_naming - add assessment measure for initial naming
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1.5.2
add utility to name one time point of an unnamed embryo from a set of named atlases (astec_atlas_init_naming)
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1.4.0
get the package version number from conda, and write it in the history log
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1.1.4
Dedicated I/O for morphonet information
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1.1.1
Evolution of cell naming procedures and atlas analysing