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Created with Raphaël 2.2.027Feb2325Nov21111029Sep284Dec222Nov1685Oct27Sep21201614131087311Aug21Julcode fixmastermasterEmphasize Boltzmann sampling capabilities in abstract and introUse \expupdate referencessmall updatesChange weight notation and avoid 'function group'Fix typos / grammar with the help of Google docsMinor edit; fix e.g./i.e. spacesEdit after Sarah's commentsSome edits after rereadUpdate notes on the rstd modelRemove superfluous multi-design model from NotesAdd gitignore and Figs-MakefileRewrite stochastic optimization examples - use new resamplingUpdate tutorial partsSome reformatting and rephrasing in the RNAPOND subsectionFinish replacing inline latex codeReplace inline latex code; input from TutorialAdd some ref in introAdd explanations to code in NotesCheck paragraph and subsubsec titles; remove trailing whitespaceRestructure affiliations; add ORCIDs; add TBI for HTFix issues with text widthChange latex classBoxes, formatting, minorUpdate link to bookchapter tutorial; use hyperrefUpdate on Overleaf.Update on Overleaf.Update on Overleaf.Update on Overleaf.Update on Overleaf.Update on Overleaf.Update on Overleaf.import RNA, remove redundant importUpdate on Overleaf.Update on Overleaf.Python styleUpdate on Overleaf.More about tandem rs designAdd riboswitch design example