Draft: Development towards 1.0 (!2) · Merge requests · AMIBIO / Infrared · GitLab

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GitLab upgrade completed. Current version is 17.11.1. We now benefit from the features of the release 17.11.

Merged WILL Sebastian requested to merge develop into master 3 years ago

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WILL Sebastian added 1 commit 3 years ago
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233e422e - Deepcopy input functions and models

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WILL Sebastian added 2 commits 3 years ago
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3d00d10d - Fix and mod alignment example

6fedcc59 - Fix bug of repeated dependency (Issue #1 (closed))

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WILL Sebastian added 1 commit 3 years ago
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f34195f8 - Reformat / improve code style

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WILL Sebastian added 2 commits 3 years ago
added 2 commits

9390548a - Optimization and traceback (Issues #4 (closed) and #8 (closed))

15f2c831 - Bump version

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WILL Sebastian added 1 commit 3 years ago
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484de586 - Use optimization in the alignment and parsimony examples

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YAO Hua-Ting added 1 commit 3 years ago
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0e1fb1c5 - Attribute _targeted_samples missing

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WILL Sebastian added 2 commits 3 years ago
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6dda8478 - Some streamlining of the interface

bd6c8256 - Update notebooks

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WILL Sebastian added 1 commit 3 years ago
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4f4797d6 - Fix

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WILL Sebastian added 4 commits 3 years ago
added 4 commits

52425eac - Fix writing of dependency graph

73cea41b - Remove unnecessary line for debug mode in setup.py

cb6f1a92 - Rename FiniteDomains -> FiniteDomainVector

85eee2b3 - Fix bug in init of Assignment and assert

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WILL Sebastian added 1 commit 3 years ago
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f0080137 - Remove boost::graph dependency

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WILL Sebastian added 1 commit 3 years ago
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9dece67a - Clean up

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WILL Sebastian added 5 commits 3 years ago
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3e7bd1af - libinfrared: export FiniteDomain.empty

96aafe46 - Add NotBPComp; IUPAC support

f9b200bd - Add functionality & fix inconsistency check

d49eb28a - Notebook updates

840a1ab0 - Add notebook for bookchapter

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WILL Sebastian added 3 commits 3 years ago
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e7b2d397 - Update bookchapter tutorial

28de945e - Update bookchapter tutorial

2d55718b - Add tandem rs design to bookchapter notebook

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WILL Sebastian added 1 commit 3 years ago
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63edfa5e - Add Hua-Ting's RNAPOND code to bookchapter-tutorial

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YAO Hua-Ting added 2 commits 3 years ago
added 2 commits

c90432c5 - Add seed for RNAPOND-like figure

d8629cd3 - Clean

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WILL Sebastian added 1 commit 3 years ago
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7e3ef088 - Include wrapper for RNAeval (for Windows users)

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WILL Sebastian added 1 commit 3 years ago
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a7111124 - Sync bookchapter notebook; cleanup; add section numbers

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WILL Sebastian added 1 commit 3 years ago
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194260c5 - Clean todo

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WILL Sebastian added 1 commit 3 years ago
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bdc82819 - Clean up files

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WILL Sebastian added 1 commit 3 years ago
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42e0b148 - Strip README.md

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