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Commit ee993957 authored by CREMONESI Francesco's avatar CREMONESI Francesco
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Try to brutally inject fedbiomed environment

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#
# environment for fedbiomed-researcher
#
#
#
name: fedbiomed-researcher
channels:
- conda-forge
dependencies:
# minimal environment
- python >=3.9,<3.10
- pip
- jupyter
- ipython
# tests
- pytest >6.2.2
- tinydb >=4.4.0,<5.0.0
- tabulate >=0.8.9,<0.9.0
- nose
- coverage
# tools
- colorama
- pyyaml
# code
- GitPython >=3.1.14,<4.0.0
- requests >=2.25.1,<3.0.0
- paho-mqtt >=1.5.1,<2.0.0
- validators >=0.18.2,<0.19.0
- tqdm >=4.59.0,<5.0.0
- git
- packaging >=23.0,<24.0
# these two have to be aligned
- cryptography ~=39.0
- pyopenssl ~=23.0
# git notebook striper
- nbstripout
- joblib >=1.0.1
# sklearn
# scipy >= 1.9 from conda-forge needs recent GLIBC thus causes issue 389
# with many current systems
# another option is to install scipy from pip
- scipy >=1.8.0,<1.9.0
- scikit-learn >=1.0.0,<1.1.0
# other
- itk
- pip:
# nn
- torch >=1.8.0,<2.0.0
- torchvision >=0.9.0,<0.15.0
- opacus >=1.2.0,<1.3.0
- monai >=1.1.0,<1.2.0
# other
- msgpack ~=1.0
- persist-queue >=0.5.1,<0.6.0
- pandas >=1.2.3,<2.0.0
- openpyxl >= 3.0.9,<3.1
- tensorboard
- JSON-log-formatter
- python-minifier ==2.5.0
# for nbconvert
- jupyter_contrib_nbextensions
- pathvalidate
# FLamby
- git+https://github.com/owkin/FLamby@main
# declearn
- declearn[torch] ~= 2.1.0
- gmpy2 >=2.1,< 2.2
#### Notebook-specific packages ####
# This section contains packages that are needed only to run specific notebooks
- unet == 0.7.7
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