#1492 Remove Tclap from the library - give it the same status as the others...

#1492 Remove Tclap from the library - give it the same status as the others third party libraries that are installed through ThirdPartyCompilationFactory.

CMakeLists.txt

@@ -48,14 +48,13 @@ include(MoReFEMSettings)
 
 
 include_directories(${CMAKE_CURRENT_SOURCE_DIR}/Sources /
-                    ${CMAKE_CURRENT_SOURCE_DIR}/Sources/ThirdParty/Source/Tclap/include /
-                    ${CMAKE_CURRENT_SOURCE_DIR}/Sources/ThirdParty/Source/Seldon /
                     ${OPEN_MPI_INCL_DIR} /
                     ${PETSC_INCL_DIR} /
                     ${PARMETIS_INCL_DIR} /
                     ${LUA_INCL_DIR} /
                     ${BOOST_INCL_DIR} /
                     ${XTENSOR_INCL_DIR} /
+                    ${TCLAP_INCL_DIR} /
                     ${LIBMESH_INCL_DIR}
                     )
 

Sources/CMakeLists.txt

@@ -100,7 +100,7 @@ install(DIRECTORY ${CMAKE_CURRENT_LIST_DIR}/ DESTINATION ${MOREFEM_INSTALL_DIR_I
 #
 add_library(morefem_cmake INTERFACE)
 
-target_include_directories(morefem_cmake INTERFACE $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}> $<INSTALL_INTERFACE:${PROJECT_NAME}/include>  ${OPEN_MPI_INCL_DIR} ${PETSC_INCL_DIR} ${PARMETIS_INCL_DIR} ${LUA_INCL_DIR} ${BOOST_INCL_DIR} ${LIBMESH_INCL_DIR} ${XTENSOR_INC_DIR} $<INSTALL_INTERFACE:${PROJECT_NAME}/include/ThirdParty/Source/Tclap/include>)
+target_include_directories(morefem_cmake INTERFACE $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}> $<INSTALL_INTERFACE:${PROJECT_NAME}/include>  ${OPEN_MPI_INCL_DIR} ${PETSC_INCL_DIR} ${PARMETIS_INCL_DIR} ${LUA_INCL_DIR} ${BOOST_INCL_DIR} ${LIBMESH_INCL_DIR} ${XTENSOR_INCL_DIR} ${TCLAP_INCL_DIR} )
 
 target_link_libraries(morefem_cmake INTERFACE ${MOREFEM_POST_PROCESSING} ${MOREFEM_TEST_TOOLS})
 

Sources/ThirdParty/Source/Tclap/AUTHORS

-
-original author: Michael E. Smoot
-invaluable contributions: Daniel Aarno
-more contributions: Erik Zeek
-more contributions: Fabien Carmagnac (Tinbergen-AM)
-outstanding editing: Carol Smoot

Sources/ThirdParty/Source/Tclap/COPYING

-
-
-Copyright (c) 2003 Michael E. Smoot 
-Copyright (c) 2004 Daniel Aarno
-Copyright (c) 2017 Google Inc.
-
-Permission is hereby granted, free of charge, to any person 
-obtaining a copy of this software and associated documentation 
-files (the "Software"), to deal in the Software without restriction, 
-including without limitation the rights to use, copy, modify, merge, 
-publish, distribute, sublicense, and/or sell copies of the Software, 
-and to permit persons to whom the Software is furnished to do so, 
-subject to the following conditions:
-
-The above copyright notice and this permission notice shall be 
-included in all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, 
-EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES 
-OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND 
-NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS 
-BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN 
-AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR 
-IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN 
-THE SOFTWARE.
-
-

Sources/ThirdParty/Source/Tclap/INSTALL

-Basic Installation
-==================
-
-   These are generic installation instructions.
-
-   The `configure' shell script attempts to guess correct values for
-various system-dependent variables used during compilation.  It uses
-those values to create a `Makefile' in each directory of the package.
-It may also create one or more `.h' files containing system-dependent
-definitions.  Finally, it creates a shell script `config.status' that
-you can run in the future to recreate the current configuration, a file
-`config.cache' that saves the results of its tests to speed up
-reconfiguring, and a file `config.log' containing compiler output
-(useful mainly for debugging `configure').
-
-   If you need to do unusual things to compile the package, please try
-to figure out how `configure' could check whether to do them, and mail
-diffs or instructions to the address given in the `README' so they can
-be considered for the next release.  If at some point `config.cache'
-contains results you don't want to keep, you may remove or edit it.
-
-   The file `configure.in' is used to create `configure' by a program
-called `autoconf'.  You only need `configure.in' if you want to change
-it or regenerate `configure' using a newer version of `autoconf'.
-
-The simplest way to compile this package is:
-
-  1. `cd' to the directory containing the package's source code and type
-     `./configure' to configure the package for your system.  If you're
-     using `csh' on an old version of System V, you might need to type
-     `sh ./configure' instead to prevent `csh' from trying to execute
-     `configure' itself.
-
-     Running `configure' takes awhile.  While running, it prints some
-     messages telling which features it is checking for.
-
-  2. Type `make' to compile the package.
-
-  3. Optionally, type `make check' to run any self-tests that come with
-     the package.
-
-  4. Type `make install' to install the programs and any data files and
-     documentation.
-
-  5. You can remove the program binaries and object files from the
-     source code directory by typing `make clean'.  To also remove the
-     files that `configure' created (so you can compile the package for
-     a different kind of computer), type `make distclean'.  There is
-     also a `make maintainer-clean' target, but that is intended mainly
-     for the package's developers.  If you use it, you may have to get
-     all sorts of other programs in order to regenerate files that came
-     with the distribution.
-
-Compilers and Options
-=====================
-
-   Some systems require unusual options for compilation or linking that
-the `configure' script does not know about.  You can give `configure'
-initial values for variables by setting them in the environment.  Using
-a Bourne-compatible shell, you can do that on the command line like
-this:
-     CC=c89 CFLAGS=-O2 LIBS=-lposix ./configure
-
-Or on systems that have the `env' program, you can do it like this:
-     env CPPFLAGS=-I/usr/local/include LDFLAGS=-s ./configure
-
-Compiling For Multiple Architectures
-====================================
-
-   You can compile the package for more than one kind of computer at the
-same time, by placing the object files for each architecture in their
-own directory.  To do this, you must use a version of `make' that
-supports the `VPATH' variable, such as GNU `make'.  `cd' to the
-directory where you want the object files and executables to go and run
-the `configure' script.  `configure' automatically checks for the
-source code in the directory that `configure' is in and in `..'.
-
-   If you have to use a `make' that does not supports the `VPATH'
-variable, you have to compile the package for one architecture at a time
-in the source code directory.  After you have installed the package for
-one architecture, use `make distclean' before reconfiguring for another
-architecture.
-
-Installation Names
-==================
-
-   By default, `make install' will install the package's files in
-`/usr/local/bin', `/usr/local/man', etc.  You can specify an
-installation prefix other than `/usr/local' by giving `configure' the
-option `--prefix=PATH'.
-
-   You can specify separate installation prefixes for
-architecture-specific files and architecture-independent files.  If you
-give `configure' the option `--exec-prefix=PATH', the package will use
-PATH as the prefix for installing programs and libraries.
-Documentation and other data files will still use the regular prefix.
-
-   In addition, if you use an unusual directory layout you can give
-options like `--bindir=PATH' to specify different values for particular
-kinds of files.  Run `configure --help' for a list of the directories
-you can set and what kinds of files go in them.
-
-   If the package supports it, you can cause programs to be installed
-with an extra prefix or suffix on their names by giving `configure' the
-option `--program-prefix=PREFIX' or `--program-suffix=SUFFIX'.
-
-Optional Features
-=================
-
-   Some packages pay attention to `--enable-FEATURE' options to
-`configure', where FEATURE indicates an optional part of the package.
-They may also pay attention to `--with-PACKAGE' options, where PACKAGE
-is something like `gnu-as' or `x' (for the X Window System).  The
-`README' should mention any `--enable-' and `--with-' options that the
-package recognizes.
-
-   For packages that use the X Window System, `configure' can usually
-find the X include and library files automatically, but if it doesn't,
-you can use the `configure' options `--x-includes=DIR' and
-`--x-libraries=DIR' to specify their locations.
-
-Specifying the System Type
-==========================
-
-   There may be some features `configure' can not figure out
-automatically, but needs to determine by the type of host the package
-will run on.  Usually `configure' can figure that out, but if it prints
-a message saying it can not guess the host type, give it the
-`--host=TYPE' option.  TYPE can either be a short name for the system
-type, such as `sun4', or a canonical name with three fields:
-     CPU-COMPANY-SYSTEM
-
-See the file `config.sub' for the possible values of each field.  If
-`config.sub' isn't included in this package, then this package doesn't
-need to know the host type.
-
-   If you are building compiler tools for cross-compiling, you can also
-use the `--target=TYPE' option to select the type of system they will
-produce code for and the `--build=TYPE' option to select the type of
-system on which you are compiling the package.
-
-Sharing Defaults
-================
-
-   If you want to set default values for `configure' scripts to share,
-you can create a site shell script called `config.site' that gives
-default values for variables like `CC', `cache_file', and `prefix'.
-`configure' looks for `PREFIX/share/config.site' if it exists, then
-`PREFIX/etc/config.site' if it exists.  Or, you can set the
-`CONFIG_SITE' environment variable to the location of the site script.
-A warning: not all `configure' scripts look for a site script.
-
-Operation Controls
-==================
-
-   `configure' recognizes the following options to control how it
-operates.
-
-`--cache-file=FILE'
-     Use and save the results of the tests in FILE instead of
-     `./config.cache'.  Set FILE to `/dev/null' to disable caching, for
-     debugging `configure'.
-
-`--help'
-     Print a summary of the options to `configure', and exit.
-
-`--quiet'
-`--silent'
-`-q'
-     Do not print messages saying which checks are being made.  To
-     suppress all normal output, redirect it to `/dev/null' (any error
-     messages will still be shown).
-
-`--srcdir=DIR'
-     Look for the package's source code in directory DIR.  Usually
-     `configure' can determine that directory automatically.
-
-`--version'
-     Print the version of Autoconf used to generate the `configure'
-     script, and exit.
-
-`configure' also accepts some other, not widely useful, options.

Sources/ThirdParty/Source/Tclap/Makefile.am

-
-ACLOCAL_AMFLAGS = -I config
-
-SUBDIRS = include examples docs tests msc config
-
-pkgconfigdir = $(libdir)/pkgconfig
-pkgconfig_DATA = $(PACKAGE).pc
-EXTRA_DIST = $(PACKAGE).pc.in
-
-DISTCLEANFILES = $(PACKAGE).pc

Sources/ThirdParty/Source/Tclap/NEWS

-
-4/3/03 -  Checked in a good sized update that move support of the library
-closer to that of the POSIX/GNU standards.  Switches can now be combined into
-single arguments, -- is supported and MultiArgs now allow for multiple labeled
-args.  I've also changed things a bit by subclassing MultiArg and ValueArg
-to get unlabeled versions of these classes.  I think this is a bit cleaner
-design, despite two new classes.
-
-1/7/04 - ... and with great trepidation, I release 0.9.6.  Loads of changes.  
-The big change is that you can now define the delimiter used to separate 
-argument flags and argument values. So if you prefer arguments of the style 
-"-s=asdf"  instead of "-s asdf", you can do so.  I've also fixed a number of 
-warnings generated and fixed a few pathologic bugs related to combined
-switches.  That said, I suspect that there may be a few significant bugs
-in this release that I haven't uncovered yet.  Please let me know ASAP if
-you find any.
-
-2/6/04 - Another big release: 0.9.7.  First is a bugfix submitted by 
-Matthias Stiller that specializes the _extractValue method in a couple of
-places that allows strings with spaces to be correctly read by tclap.  A
-second bug found by John Ling has been fixed so that exceptions are thrown 
-if more than one value is parsed from a single arg or if the second value 
-parsed is invalid.   A big new feature has been added that allows args to
-be xor'd.  This means that two (or more) args can be specified such that
-one and only one of the args is required.  If a second arg is found an
-exception is thrown.  See the manual for details.  As always, let me know
-if you run into any problems.
-
-2/10/04 - A minor release: 0.9.8.  A couple of bug fixes for 0.9.7 are
-included and a feature has been added that allows Args to be specified 
-without short options, meaning the user is forced to use only long options.
-This is useful for programs with more options than map sensibly to single
-chars.
-
-7/3/04 - Added a new constructor and handling to the various value args
-that allows the user to provide a list of values that the input arg values 
-should be restricted to.  
-
-8/9/04 - Created a function to print the output nicely, meaning line wraps
-are handled somewhat sensibly now.  Also changed error handling slightly. 
-Instead of printing the entire usage, I just print a short usage.  If
-someone really hates this, its easy to change back.  Let me know if this 
-causes problems.  I think this equals release 0.9.9!
-
-10/19/04 - A number of changes that should substantially improve the library.
-The most important being that we've moved the implementation of the library
-entirely into the header files.  This means there is no longer a library to
-complile against, you simply have to #include <tclap/CmdLine.h>.  New
-constructors have been added to the various Arg classes that allow them to 
-be constructed with a CmdLine reference so that you no longer need to call
-the add method if you prefer it that way.  The output generated by the library
-has been confined to a few methods in the CmdLine class.  This means to 
-generate different output you can extend CmdLine and override the offending
-methods.  A number of style changes have been made in the code base to 
-conform better to C++ best practices.   A thoughtful user has contributed
-project files for the building the examples Microsoft Visual Studio.  See
-the README file in the msc directory for more details
-
-And so we have release 1.0!
-
-10/30/04 - A few bugfixes.  Now checking for include.h before including it. 
-This will help Windows users who don't have it.  Also changed test1 so that 
-it doesn't use toupper, which apparently causes problem for non-ASCII 
-character sets.
-
-10/31/04 - A few more tweaks, none of which should be noticeable to people
-who are already using the lib without trouble. Maybe I shouldn't release 
-things early in the morning!  Also note that manual.html is now generated 
-from manual.xml.  If you have your own docbook xsl style that you prefer, 
-then have at it.
-
-12/3/04 - Some minor bug fixes including the removal of the two stage name
-lookup ifdefs which means that the software should work out of the box 
-for gcc 3.4+.  Isolated output in a separate class that should make
-customization of output easier.  I also included a rudimentary output class
-that generated a (bad) Docbook command summary when used. 
-
-1/4/05 - Several bug fixes, but no new features. Fixed a bug when mandatory 
-long args and unlabeled args were used together and weren't working properly.
-Now they can be used together. Fixed another bug in spacePrint where long 
-program names caused an infinite loop.  Finally, fixed a small memory leak.
-
-1/6/05 - Fixed a bug where setting the output object for a CmdLine didn't
-register for version or usage generation. Doh!  Created a Constraint interface
-that should facilitate the creation of different constraints on Args.
-This has involved changing the constructor interface, so if you've been using
-allowed lists, you'll need to make a small modification to your existing code.
-See examples/test6.cpp for details.
-
-9/26/09 - Whoa, long break.  Primarily a bug-fix release, but we did switch 
-to using traits, which necessitates the minor version bump. Take a look 
-at test11.cpp and test12.cpp for examples on using ArgTraits for extending 
-tclap for different types.
-
-4/16/11 - Another long break!  Several minor bug and memory leak fixes.
-
-12/26/17 - v1.2 bug fix release
\ No newline at end of file

Sources/ThirdParty/Source/Tclap/README

-
-TCLAP - Templatized Command Line Argument Parser
-
-This is a simple C++ library that facilitates parsing command line
-arguments in a type independent manner.  It doesn't conform exactly
-to either the GNU or POSIX standards, although it is close.  See
-docs/manual.html for descriptions of how things work or look at the
-simple examples in the examples dir.
-
-To find out what the latest changes are read the NEWS file in this directory.
-
-
-Any and all feedback is welcome to:  Mike Smoot <mes@aescon.com>
-
-
-

Sources/ThirdParty/Source/Tclap/config/Makefile.am

-
-EXTRA_DIST = ac_cxx_have_sstream.m4\
-             ac_cxx_have_strstream.m4\
-			 ac_cxx_namespaces.m4\
-			 bb_enable_doxygen.m4
-
-

Sources/ThirdParty/Source/Tclap/config/ac_cxx_have_long_long.m4

-dnl @synopsis AC_CXX_HAVE_LONG_LONG
-dnl
-dnl If the C++ implementation have a long long type
-dnl
-AC_DEFUN([AC_CXX_HAVE_LONG_LONG],
-[AC_LANG_SAVE
- AC_LANG_CPLUSPLUS
- AC_TRY_COMPILE([],[long long x = 1; return 0;],
- ac_cv_cxx_have_long_long=yes, ac_cv_cxx_have_long_long=no)
-
-if test "$ac_cv_cxx_have_long_long" = yes; then
-  AC_DEFINE(HAVE_LONG_LONG, 1,
-  [define if the C++ implementation have long long])
-else
-  AC_DEFINE(HAVE_LONG_LONG, 0,
-  [define if the C++ implementation have long long])
-fi
-AC_LANG_RESTORE
-])

Sources/ThirdParty/Source/Tclap/config/ac_cxx_have_sstream.m4

-dnl @synopsis AC_CXX_HAVE_SSTREAM
-dnl
-dnl If the C++ library has a working stringstream, define HAVE_SSTREAM.
-dnl
-dnl @author Ben Stanley
-dnl @version $Id: ac_cxx_have_sstream.m4,v 1.2 2006/02/22 02:10:28 zeekec Exp $
-dnl
-AC_DEFUN([AC_CXX_HAVE_SSTREAM],
-[AC_REQUIRE([AC_CXX_NAMESPACES])
-AC_LANG_SAVE
-AC_LANG_CPLUSPLUS
-AC_CHECK_HEADERS(sstream)
-AC_CACHE_CHECK([whether the STL defines stringstream],
-[ac_cv_cxx_have_sstream],
-[AC_TRY_COMPILE([#include <sstream>
-#ifdef HAVE_NAMESPACES
-using namespace std;
-#endif],[stringstream message; message << "Hello"; return 0;],
- ac_cv_cxx_have_sstream=yes, ac_cv_cxx_have_sstream=no)
-])
-if test "$ac_cv_cxx_have_sstream" = yes; then
-  AC_DEFINE(HAVE_SSTREAM,1,[define if the compiler has stringstream])
-fi
-AC_LANG_RESTORE
-])

Sources/ThirdParty/Source/Tclap/config/ac_cxx_have_strstream.m4

-dnl @synopsis AC_CXX_HAVE_STRSTREAM
-dnl
-dnl If the C++ library has a working strstream, define HAVE_CLASS_STRSTREAM.
-dnl
-dnl Adapted from ac_cxx_have_sstream.m4 by Steve Robbins
-dnl
-AC_DEFUN([AC_CXX_HAVE_STRSTREAM],
-[AC_REQUIRE([AC_CXX_NAMESPACES])
- AC_LANG_SAVE
- AC_LANG_CPLUSPLUS
- AC_CHECK_HEADERS(strstream)
- AC_CACHE_CHECK([whether the STL defines strstream],
-[ac_cv_cxx_have_class_strstream],
-[AC_TRY_COMPILE([#if HAVE_STRSTREAM
-#  include <strstream>
-#else
-#  include <strstream.h>
-#endif
-#ifdef HAVE_NAMESPACES
-using namespace std;
-#endif],[ostrstream message; message << "Hello"; return 0;],
- ac_cv_cxx_have_class_strstream=yes, ac_cv_cxx_have_class_strstream=no)
-])
-if test "$ac_cv_cxx_have_class_strstream" = yes; then
-  AC_DEFINE(HAVE_CLASS_STRSTREAM,1,[define if the library defines strstream])
-fi
-AC_LANG_RESTORE
-])

Sources/ThirdParty/Source/Tclap/config/ac_cxx_namespaces.m4

-dnl @synopsis AC_CXX_NAMESPACES
-dnl
-dnl If the compiler can prevent names clashes using namespaces, define
-dnl HAVE_NAMESPACES.
-dnl
-dnl @version $Id: ac_cxx_namespaces.m4,v 1.1 2003/03/19 02:40:00 mes5k Exp $
-dnl @author Luc Maisonobe
-dnl
-AC_DEFUN([AC_CXX_NAMESPACES],
-[AC_CACHE_CHECK(whether the compiler implements namespaces,
-ac_cv_cxx_namespaces,
-[AC_LANG_SAVE
- AC_LANG_CPLUSPLUS
- AC_TRY_COMPILE([namespace Outer { namespace Inner { int i = 0; }}],
-                [using namespace Outer::Inner; return i;],
- ac_cv_cxx_namespaces=yes, ac_cv_cxx_namespaces=no)
- AC_LANG_RESTORE
-])
-if test "$ac_cv_cxx_namespaces" = yes; then
-  AC_DEFINE(HAVE_NAMESPACES,1,[define to 1 if the compiler implements namespaces])
-fi
-])

Sources/ThirdParty/Source/Tclap/config/ac_cxx_warn_effective_cxx.m4

-dnl HAVE_WARN_EFFECTIVE_CXX
-dnl ----------------------
-dnl
-dnl If the C++ compiler accepts the `-Weffc++' flag,
-dnl set output variable `WARN_EFFECTIVE_CXX' to `-Weffc++' and
-dnl `WARN_NO_EFFECTIVE_CXX' to `-Wno-effc++'.  Otherwise,
-dnl leave both empty.
-dnl
-AC_DEFUN([HAVE_WARN_EFFECTIVE_CXX],
-[
-AC_REQUIRE([AC_PROG_CXX])
-AC_MSG_CHECKING([whether the C++ compiler (${CXX}) accepts -Weffc++])
-AC_CACHE_VAL([cv_warn_effective_cxx],
-[
-AC_LANG_SAVE
-AC_LANG_CPLUSPLUS
-save_cxxflags="$CXXFLAGS"
-CXXFLAGS="$CXXFLAGS -Weffc++"
-AC_TRY_COMPILE([],[main();],
-[cv_warn_effective_cxx=yes], [cv_warn_effective_cxx=no])
-CXXFLAGS="$save_cxxflags"
-AC_LANG_RESTORE
-])
-AC_MSG_RESULT([$cv_warn_effective_cxx])
-if test "$cv_warn_effective_cxx" = yes; then
-	WARN_EFFECTIVE_CXX=-Weffc++
-	WARN_NO_EFFECTIVE_CXX=-Wno-effc++
-fi
-AC_SUBST([WARN_EFFECTIVE_CXX])
-AC_SUBST([WARN_NO_EFFECTIVE_CXX])
-])

Sources/ThirdParty/Source/Tclap/config/bb_enable_doxygen.m4

-AC_DEFUN([BB_ENABLE_DOXYGEN],
-[
-AC_ARG_ENABLE(doxygen, [--enable-doxygen 	enable documentation generation with doxygen (auto)])
-if test "x$enable_doxygen" = xno; then
-        enable_doc=no
-else 
-        AC_PATH_PROG(DOXYGEN, doxygen, , $PATH)
-        if test x$DOXYGEN = x; then
-                if test "x$enable_doxygen" = xyes; then
-                        AC_MSG_ERROR([could not find doxygen])
-                fi
-                enable_doc=no
-        else
-                enable_doc=yes
-        fi
-fi
-AM_CONDITIONAL(DOC, test x$enable_doc = xyes)
-])