unfound mesh term
When i run biopax to cadbiom this way python -m biopax2cadbiom model --triplestore https://openstack-192-168-100-62.genouest.org/sparql/ --listOfGraphUri http://humanbipax.org/2
I have this error. Traceback (most recent call last): File "/local/miniconda3/envs/python-2.7.15/lib/python2.7/runpy.py", line 174, in _run_module_as_main "main", fname, loader, pkg_name) File "/local/miniconda3/envs/python-2.7.15/lib/python2.7/runpy.py", line 72, in _run_code exec code in run_globals File "/home/genouest/dyliss/sauber/biopax2cadbiom/biopax2cadbiom/main.py", line 150, in main() File "/home/genouest/dyliss/sauber/biopax2cadbiom/biopax2cadbiom/main.py", line 145, in main args.func(args) File "/home/genouest/dyliss/sauber/biopax2cadbiom/biopax2cadbiom/main.py", line 60, in make_model b2c.main(params) File "/home/genouest/dyliss/sauber/biopax2cadbiom/biopax2cadbiom/biopax_converter.py", line 1162, in main addReactionToEntities(dictReaction, dictControl, dictPhysicalEntity) File "/home/genouest/dyliss/sauber/biopax2cadbiom/biopax2cadbiom/biopax_converter.py", line 92, in addReactionToEntities dictPhysicalEntity[control.controller].reactions.add( KeyError: u'http://www.ctdbase.org/#chemical_mesh_d019308'
Is it linked to the way the biopax file is built?
Or maybe to the i way i compiled biopax2cadbiom?