Issues · vidjil / vidjil · GitLab

Short name et VDJ/VDDJ : réduire le seuil de 6 ?

#2789 · opened Nov 15, 2017 by Thonier Florian bikeshedding client client-cloneList client-info client-responsive priority-1-low wont-fix
- CLOSED
- 11
updated Aug 07, 2018
Less et couleurs en minuscules

#2799 · opened Nov 17, 2017 by Mathieu Giraud client-less-css priority-1-low
- CLOSED
- 1
- 2
updated Feb 05, 2019
URL: le plot preset devrait être correctement initialisé, ou au moins non initialisé à 0

#2807 · opened Nov 18, 2017 by Mathieu Giraud client-api priority-1-low
- CLOSED
- 1
updated Nov 19, 2017
Séparation serveurs : app (html/js) // vda

#1448 · opened Nov 29, 2016 by Vidjil Team !-reflexion priority-1-low server server-hosting server-upload
- CLOSED (MOVED)
- 0
updated Nov 22, 2017
Expiration des fichiers .fasta

#1098 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion priority-1-low server-hosting server-smtp
- CLOSED
- 0
updated Nov 22, 2017
Récupérer des données par FTP/HTTP ou autre

#1475 · opened Nov 29, 2016 by Vidjil Team priority-1-low server server-hosting server-integration server-upload
- CLOSED
- 1
updated Nov 22, 2017
TEST_TAP_EQUAL pour les tests unitaires

#2919 · opened Nov 30, 2017 by Mathieu Giraud *-go cpp dev-tests priority-1-low
- CLOSED
- 0
updated Jan 17, 2018
Raisons de non-segmentation : remettre à plat, documenter ?

#1273 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug !-reflexion cpp-heuristic priority-1-low
- CLOSED
- 0
updated Nov 21, 2019
Le calcul de la e-valeur devrait prendre en compte le -t

#1604 · opened Nov 29, 2016 by Vidjil Team bio-e-value cpp-heuristic priority-1-low wont-fix
- CLOSED
- 1
updated Apr 10, 2018
germline/germlines.data: trouver un format utile, l'utiliser un peu partout

#1012 · opened Nov 29, 2016 by Vidjil Team old_tracker !-hard bio-germlines cpp priority-1-low repseq-standardization
- CLOSED
- 0
updated Dec 04, 2017
Automatiser création pseudo-germlines, en particulier Dd2-Dd3, get-germline incomplet

#973 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines priority-1-low
- CLOSED
- 0
updated Dec 04, 2017
Réécrire les tests unitaires avec TEST_TAP_EQUAL

#2989 · opened Jan 17, 2018 by Mathieu Giraud Algo 2017.11 *-go cpp dev-tests priority-1-low
- CLOSED
- 1
updated Jan 30, 2018
Faire un mock pour window pour les tests QUnit bidouillant l'url

#2221 · opened Mar 07, 2017 by Mathieu Giraud client client-api dev-tests priority-1-low
- CLOSED
- 0
updated Feb 23, 2018
Génération du JSON : l'espace mémoire augmente de 50% à la fin de Vidjil

#2120 · opened Jan 20, 2017 by Mikaël Salson json-export cpp cpp-mem priority-1-low
- CLOSED
- 35
updated Mar 22, 2019
La génération du JSON peut allouer 1 GB de mémoire à la fin de vidjil-algo

#3395 · opened Jul 18, 2018 by Mathieu Giraud cpp cpp-mem priority-1-low
- CLOSED
- 1
- 1
updated Oct 17, 2018
Colorer l'icône de tag multiple lorsque c'est pertinent

#3689 · opened Jan 22, 2019 by Mathieu Giraud client client-ergonomy priority-1-low
- CLOSED
- 1
- 1
updated Feb 11, 2019
Afficher des informations sur tout clone

#3989 · opened Oct 01, 2019 by Mathieu Giraud client priority-1-low
- CLOSED
- 1
- 2
updated Nov 04, 2019
Présence de séquences dans le segmenter : uniquement has_sequence ?

#4008 · opened Oct 16, 2019 by Mathieu Giraud client-segmenter priority-1-low
- CLOSED
- 1
updated Oct 23, 2019
Retour quand erreur à la création de compte

#4053 · opened Nov 15, 2019 by Mathieu Giraud priority-1-low server server-admin
- CLOSED
- 1
updated Nov 15, 2019
Axes, colonnes, pretty, fillAxisBox et DOM

#2436 · opened May 12, 2017 by Mathieu Giraud client client-axis client-axis-columns priority-1-low
- CLOSED
- 1
- 2
updated May 31, 2017
Tagguer le IGH D7-27-0/92/0-J1 non recombiné d'une manière particulière

#2232 · opened Mar 09, 2017 by Mathieu Giraud Algo 2018.08 Paris-Pitié bio-analyze-more bio-primers cpp priority-1-low
- CLOSED
- 1
- 5
updated Nov 21, 2019
should-to-tap: Ne pas faire la shell-expansion sur la ligne "Launching"

#2183 · opened Feb 14, 2017 by Mathieu Giraud dev-tests dev-tests-should-get priority-1-low
- CLOSED
- 2
updated Apr 18, 2018
Faire au moins un test avec souris et rat

#2180 · opened Feb 14, 2017 by Mathieu Giraud Algo 2017.03 bio-species cpp dev-tests priority-1-low
- CLOSED
- 1
updated Feb 15, 2017
Vidjil morning : le mettre dans les scripts d'install

#1831 · opened Nov 29, 2016 by Vidjil Team priority-1-low server-admin server-monitor
- CLOSED
- 1
updated Oct 27, 2017
Vidjil morning : /etc/update-motd.d/50-landscape-sysinfo

#1830 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-1-low server-admin server-monitor
- CLOSED
- 1
updated Apr 16, 2018
Génération de données simulées

#1776 · opened Nov 29, 2016 by Vidjil Team old_tracker com-paper priority-1-low
- CLOSED (MOVED)
- 0
updated Apr 16, 2018
Vidjil-all-slaves directement après coverage ?

#1620 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-ci dev-tests priority-1-low
- CLOSED
- 1
updated Mar 05, 2019
Makefile: ne pas regénérer vidjil et align.cgi quand pas besoin

#1583 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Nettoyage des fausses dates

#1568 · opened Nov 29, 2016 by Vidjil Team old_tracker data priority-1-low
- CLOSED
- 1
updated Nov 20, 2018
should_get : * est parfois shell-étendu

#1529 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug dev-tests-should-get priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Color by locus

#1516 · opened Nov 29, 2016 by Vidjil Team old_tracker client priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Se passer de org-babel-tangle ?

#1444 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-tests priority-1-low wont-fix
- CLOSED
- 0
updated Nov 29, 2016
fuse.py n'arrive plus a fusionner des fichier clntab et vidjil

#1433 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-1-low server-fuse
- CLOSED
- 1
updated May 18, 2017
algo/tools: réparer cut.cpp

#1401 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp dev-dead-code priority-1-low
- CLOSED
- 1
updated Aug 28, 2017
noms des fichiers .data et .analysis exportés

#1338 · opened Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
- CLOSED
- 0
updated Feb 01, 2017
nom du fichier .csv

#1337 · opened Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
- CLOSED
- 0
updated Feb 01, 2017
(et le backdoor du search, mais ok)

#1336 · opened Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
- CLOSED
- 1
updated Feb 01, 2017
export pdf

#1335 · opened Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
- CLOSED
- 1
updated Feb 01, 2017
page des fichiers fasta d'un patient

#1334 · opened Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
- CLOSED
- 0
updated Feb 01, 2017
nom du patient transféré dans le .analysis (et affiché dans le info)

#1333 · opened Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low sub
- CLOSED
- 0
updated Feb 01, 2017
Anonymisation : il reste quelques endroits en clair

#1332 · opened Nov 29, 2016 by Vidjil Team old_tracker #-privacy *-go priority-1-low
- CLOSED
- 1
updated Feb 01, 2017
admin: dans la table "user list", voir quelques détails

#1313 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Petits clones qui frétillent

#1300 · opened Nov 29, 2016 by Vidjil Team old_tracker client-grid client-ugly priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Réuploader un fichier garde le nom d'origine

#1264 · opened Nov 29, 2016 by Vidjil Team !-reflexion priority-1-low server-database
- CLOSED
- 1
updated Jan 05, 2017
warnings par mail si cela baisse ?

#1259 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-control dev-robust priority-1-low server-compare-last-results sub
- CLOSED
- 1
updated Nov 20, 2018
accepter si on segmente des reads en plus

#1258 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-control dev-robust priority-1-low server-compare-last-results sub
- CLOSED
- 1
updated Nov 20, 2018
Clones sans representative ?

#1167 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp-representative dev-dead-code dev-refactor priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Le lancement de fuse.py devrait être configurable dans la config

#1145 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-database priority-1-low server-database server-fuse
- CLOSED
- 0
updated Nov 29, 2016
On ne voit plus le bas du graph

#1140 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-graph priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Il ne semble pas y avoir de message d'erreur lorsque l'upload ne fonctionne pas

#1109 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague client-database priority-1-low server-upload
- CLOSED
- 1
updated Jan 11, 2017
« Add file » ne fonctionne pas toujours/pas tout de suite lorsqu'on est en train d'uploader un fichier sour FF 32

#1106 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague client-database priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Nettoyage suite au déplacement de l'aide (bougée vers doc/browser.org)

#1094 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague client-database priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Investigate code coverage for C++ codebase

#1084 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-ci dev-tests priority-1-low sub
- CLOSED
- 0
updated Nov 29, 2016
Couverture de code

#1083 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-ci dev-tests priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
model.js devrait faire moins de 2000 lignes :)

#1082 · opened Nov 29, 2016 by Vidjil Team old_tracker client dev-refactor priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Changer les boutons info/edit de place

#1075 · opened Nov 29, 2016 by Vidjil Team old_tracker client-ergonomy priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Désélectionner un analysis_file dans le 'import analysis'

#1047 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Récupérer l'exception si conf.js spécifie des fichiers inexistants

#1045 · opened Nov 29, 2016 by Vidjil Team old_tracker client priority-1-low
- CLOSED
- 2
updated Oct 19, 2018
Tests .should-get ne concernant pas l'algo

#1030 · opened Nov 29, 2016 by Vidjil Team old_tracker dev-tests dev-tests-should-get priority-1-low
- CLOSED
- 1
updated May 18, 2017
Épaisseur de la police

#1015 · opened Nov 29, 2016 by Vidjil Team client client-design client-ergonomy client-less-css priority-1-low
- CLOSED
- 0
updated Nov 15, 2017
interesting substrings: permettre d'avoir une (ou une liste de) chaîne(s) intéressantes qui ne seront pas supprimées

#1004 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-1-low server-fuse
- CLOSED
- 0
updated Nov 29, 2016
dynprog: Gotoh / gaps multiples

#1002 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp-dynprog priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Align puis ajout autre seqs: complètement décalées

#1001 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client-segmenter priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Séquences manquantes

#997 · opened Nov 29, 2016 by Vidjil Team old_tracker client feature priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Surligner la ligne survolée dans l'aligneur

#992 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-segmenter feature priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Déselection des clones dans l'aligneur

#991 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-segmenter priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
Fusionner plusieurs germline avec fuse.py

#983 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug bio-germlines priority-1-low server-fuse
- CLOSED
- 0
updated Nov 29, 2016
alertes à l'utilisateur en fonction de certaines raisons de non-segmentation

#981 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-control client client-warning cpp-heuristic priority-1-low
- CLOSED
- 1
updated Nov 20, 2018
.vdj : inclure (IMGT-)CDR3 ?

#950 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion cpp priority-1-low repseq-standardization
- CLOSED
- 0
updated Nov 29, 2016
vidjil.cpp: .json doit avoir les même limites que stdout

#929 · opened Nov 29, 2016 by Vidjil Team old_tracker cpp priority-1-low
- CLOSED
- 1
updated Sep 12, 2017
Traitement des options : supprimer docopt, choisir autre solution

#926 · opened Nov 29, 2016 by Vidjil Team Algo 2017.11 !-hard cpp cpp-compiler cpp-options priority-1-low
- CLOSED
- 1
- 8
updated Oct 19, 2017
chasse aux pixels

#923 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague client client-ergonomy client-less-css priority-1-low
- CLOSED
- 0
updated Nov 20, 2018
body-block

#913 · opened Nov 29, 2016 by Vidjil Team !!-bug *-go *-too-vague client client-grid priority-1-low
- CLOSED
- 2
updated Apr 11, 2017
bouton play

#905 · opened Nov 29, 2016 by Vidjil Team old_tracker client client-graph feature priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
... sauf celles qui sont déjà mises ailleurs ? (nom/prénom/birth/id)

#890 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague client client-export priority-1-low sub
- CLOSED
- 1
updated Apr 12, 2017
Exporter toutes les infos...

#889 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague client client-export priority-1-low sub
- CLOSED
- 1
updated Apr 12, 2017