Issues · vidjil / vidjil

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Libération de la mémoire à la fin de Aho

#3729 · opened Feb 12, 2019 by Mathieu Giraud cpp-mem cpp-speed dev-policy
- CLOSED
- 1
- 6
updated Mar 04, 2019
Compare sample ne montre pas l'ensemble des données disponibles

#3750 · opened Feb 27, 2019 by Thonier Florian !!-bug server-compare-samples
- CLOSED
- 4
updated Feb 28, 2019
Utiliser une version fixe de Web2py

#3752 · opened Feb 27, 2019 by Mikaël Salson !-reflexion #-certification dev-policy dev-robust server
- CLOSED
- 1
- 0
updated Feb 27, 2019
Les séquences ne sont plus triées par abondance dans le segmenteur

#3759 · opened Feb 28, 2019 by Mikaël Salson !!-bug *-go +-working LIL-Lille client client-aligner client-ergonomy dev-tests
- CLOSED
- 1
- 1
updated Feb 28, 2019
Retirer VIDJIL_DEFAULT_OPTIONS

#3762 · opened Feb 28, 2019 by Mathieu Giraud cpp dev-tests-should-get
- CLOSED
- 1
- 3
updated Apr 26, 2019
SampleReads : échantillon aléatoire des reads.

#3764 · opened Feb 28, 2019 by Mikaël Salson !-reflexion *-go Paris-Pitié cpp cpp-representative
- CLOSED
- 1
- 6
updated Jul 28, 2020
Tester d'anciens navigateurs sur un slave à part ?

#3765 · opened Feb 28, 2019 by Mathieu Giraud !-reflexion dev-ci dev-tests-watir
- CLOSED
- 1
- 0
updated Oct 04, 2019
Release 2019.03 (recopier sur bioinfo)

#3766 · opened Mar 01, 2019 by Mathieu Giraud *-go cpp
- CLOSED
- 25
updated May 07, 2020
CloneDB : mise à jour sur vdb et lil

#3767 · opened Mar 01, 2019 by Mathieu Giraud Apr 5, 2019 app-clonedb server-hosting
- CLOSED
- 3
updated Feb 26, 2020
Mettre Jenkins sur une autre branche que dev ?

#3768 · opened Mar 01, 2019 by Mathieu Giraud dev-ci
- CLOSED
- 4
updated Aug 27, 2020
Jenkins: enlever Vidjil-{coverage,valgrind-unit} ?

#3769 · opened Mar 01, 2019 by Mathieu Giraud *-go dev-ci
- CLOSED
- 7
updated Mar 05, 2019
vidjil-all-slaves cassé

#3771 · opened Mar 04, 2019 by Mathieu Giraud !!-broken-ci
- CLOSED
- 4
updated Oct 20, 2020
-c designations

#3772 · opened Mar 05, 2019 by Mathieu Giraud Algo 2018.12 bikeshedding cpp-options doc support-policy
- CLOSED
- 1
- 3
updated Mar 06, 2019
Aho et stanford-no-cd.should-get

#3773 · opened Mar 05, 2019 by Mathieu Giraud
- CLOSED
- 1
- 6
updated Mar 05, 2019
Les tests fonctionnels client ne plantent pas lorsqu'un test échoue

#3774 · opened Mar 05, 2019 by Mikaël Salson dev-tests dev-tests-watir
- CLOSED
- 8
updated Jun 18, 2020
Déploiement 2019.03, -c designations et options names 1 of 2 tasks completed

#3778 · opened Mar 06, 2019 by Mathieu Giraud +-deploy app-analyze server
- CLOSED
- 5
updated Mar 15, 2019
should-vdj-to-tap: est-ce que `--ignore_N` fonctionne correctement ?

#3784 · opened Mar 07, 2019 by Mikaël Salson !!-bug dev-tests-curated-vdj
- CLOSED
- 2
- 1
updated Oct 24, 2019
Combo -FaW obsolète

#3785 · opened Mar 08, 2019 by Mathieu Giraud Algo 2018.12 bikeshedding cpp-options doc server-task.py
- CLOSED
- 1
- 4
updated Mar 12, 2019
FreeBSD cassé, timeout should

#3789 · opened Mar 12, 2019 by Mathieu Giraud Algo 2018.12 !!-broken-ci
- CLOSED
- 3
updated Oct 20, 2020
valgrind-functional et representative-random-read-chooser.should-get

#3792 · opened Mar 12, 2019 by Mathieu Giraud !!-bug cpp-mem cpp-representative
- CLOSED
- 17
updated Mar 14, 2019
A quoi sert la div data de la div liste

#3793 · opened Mar 13, 2019 by Thonier Florian !!-bug !!-crisis LIL-Lille client client-design client-ergonomy priority-5-today
- CLOSED
- 6
updated Mar 13, 2019
Pertinence du format .vdj.fa et documentation

#3795 · opened Mar 14, 2019 by Mathieu Giraud Algo 2020.08 bikeshedding doc repseq-formats
- CLOSED
- 1
- 5
updated Jul 30, 2020
clang++-4.0 pas présent

#3798 · opened Mar 14, 2019 by Mathieu Giraud dev-ci
- CLOSED
- 3
updated Mar 19, 2019
Tutoriel serveur

#3800 · opened Mar 14, 2019 by Mathieu Giraud doc-tutorial priority-5-today
- CLOSED
- 2
updated Sep 27, 2020
Le menu upload prend toute la largeur, et même plus

#3805 · opened Mar 15, 2019 by Mikaël Salson !!-bug !-important client client-ergonomy client-less-css client-ugly priority-4-week vmi-responsive
- CLOSED
- 1
- 5
updated Mar 28, 2019
get reads: mettre un cursor:pointer sur l'icône

#3808 · opened Mar 17, 2019 by Mathieu Giraud *-go client-less-css
- CLOSED
- 1
- 0
updated Mar 18, 2019
filtrer pour ne conserver que les clones taggés

#3810 · opened Mar 18, 2019 by Thonier Florian !-reflexion client client-ergonomy feature
- CLOSED
- 1
updated Mar 19, 2019
Les warnings ne sont pas produits avec `-c designations`

#3811 · opened Mar 18, 2019 by Mikaël Salson Algo 2020.06 !!-bug !-easy *-go client-warning cpp cpp-finesegmenter
- CLOSED
- 2
- 1
updated Jun 10, 2020
Document diversity measures

#3812 · opened Mar 18, 2019 by Mathieu Giraud cpp doc math-stats
- CLOSED
- 0
updated Mar 18, 2019
Lien vers le gitlab dans le menu help

#3820 · opened Mar 18, 2019 by Thonier Florian client com dev-gitlab feature user-request
- CLOSED
- 1
- 1
updated Apr 02, 2019
Ajout de métadonnées: des traitement avec les dates associées

#3823 · opened Mar 18, 2019 by Thonier Florian
- CLOSED
- 1
updated Mar 19, 2019
Calculer l'index de Morisita

#3830 · opened Mar 19, 2019 by Thonier Florian Barcelona-clinic LIL-Immuno bio-immuno cpp essen-uk feature math-stats server-fuse
- CLOSED
- 1
- 9
updated Aug 07, 2020
Avoir des icones avec les informations à divers endroits de l'intercace

#3831 · opened Mar 19, 2019 by Thonier Florian
- CLOSED
- 1
updated Mar 19, 2019
Clone en R2 perdu en R1+R2 (+R2)

#3833 · opened Mar 19, 2019 by Mathieu Giraud Mar 29, 2019 !-important TOU-Toulouse bio-analyze-more com-vw-vidjil-workshop server-pre-process
- CLOSED
- 1
- 11
updated Mar 28, 2019
Bug avce la fonction align sur le segmenteur

#3834 · opened Mar 19, 2019 by Thonier Florian
- CLOSED
- 0
updated Mar 19, 2019
CLI11 / vidjil-algo: --options in.json 1 of 2 tasks completed

#3837 · opened Mar 19, 2019 by Mathieu Giraud Algo 2019.04 *-go cpp cpp-options
- CLOSED
- 1
- 1
- 5
updated Apr 02, 2019
Flexible strategy for MRD (and other things)

#3838 · opened Mar 19, 2019 by Mathieu Giraud Boldrini-Brasil bio-mrd bio-spikes cpp server-config
- CLOSED
- 9
updated Oct 14, 2019
vidjil-algo: parse 'labels' in `config`

#3839 · opened Mar 19, 2019 by Mathieu Giraud Algo 2019.04 *-go cpp cpp-options
- CLOSED
- 1
- 5
updated Apr 02, 2019
Envoyer les emails des participants du workshop

#3841 · opened Mar 19, 2019 by Thonier Florian Mar 20, 2019
- CLOSED (MOVED)
- 0
updated Mar 19, 2019
Exporter tous les clones au format AIRR

#3842 · opened Mar 19, 2019 by Thonier Florian Déploiement 2020.06 !-easy *-go +-deploy LIL-Immuno bio-immuno client-export essen-uk feature server-config server-speed user-request
- CLOSED
- 18
updated Apr 10, 2020
SAvoir si un clone est relié à un antigen

#3843 · opened Mar 19, 2019 by Thonier Florian
- CLOSED
- 0
updated Mar 19, 2019
Exporter les clones dans un format compatible avec d'autres bases de données

#3844 · opened Mar 19, 2019 by Thonier Florian Mar 19, 2021
- CLOSED
- 1
updated Mar 19, 2019
Permettre de labeliser un set de clones

#3845 · opened Mar 19, 2019 by Thonier Florian
- CLOSED
- 1
updated Mar 20, 2019
clusteriser dans l'intrerface sur la séquence en acides aminés.

#3847 · opened Mar 19, 2019 by Thonier Florian bio-AA client-cluster essen-uk feature
- CLOSED
- 2
updated Mar 21, 2019
Index pour montrer la proportion d'un répertoire à se reconstruire

#3848 · opened Mar 19, 2019 by Thonier Florian *-too-vague CRE-Créteil bio-diversity patho-CAR-T
- CLOSED
- 2
updated Nov 06, 2019
Sonar ?

#3858 · opened Mar 21, 2019 by Mathieu Giraud dev-ci dev-code-quality dev-policy
- CLOSED
- 1
updated Aug 27, 2020
--no-windows, --no-vidjil, --no-airr ?

#3861 · opened Mar 22, 2019 by Mathieu Giraud !-easy Paris-Pitié cpp cpp-export cpp-options
- CLOSED
- 1
- 10
updated Jul 28, 2020
Le bouton log a disparu

#3863 · opened Mar 22, 2019 by Thonier Florian !!-bug client
- CLOSED
- 2
updated Mar 25, 2019
Permettre depuis un run de sauter au patient parent d'un sample

#3864 · opened Mar 22, 2019 by Thonier Florian client client-ergonomy feature
- CLOSED
- 1
updated Mar 25, 2019
Avoir par défaut la séquence représentative calculée sur un échantillon aléatoire de reads

#3866 · opened Mar 25, 2019 by Mikaël Salson Algo 2019.05 !-important *-go +-deploy cpp cpp-representative
- CLOSED
- 21
updated May 24, 2019
Seul les tableaux devrait être scrollables

#3867 · opened Mar 25, 2019 by Thonier Florian LIL-Lille client-design server server-ergonomy user-request
- CLOSED
- 2
- 3
updated Mar 30, 2020
Trier automatiquement les clones de la liste

#3870 · opened Mar 25, 2019 by Thonier Florian REN-Rennes client client-cloneList client-ergonomy client-settings user-request
- CLOSED
- 1
- 5
updated Mar 18, 2020
Ajouter une etiquette "dimers" dans les tags de clones

#3871 · opened Mar 25, 2019 by Thonier Florian !-reflexion client client-ergonomy feature
- CLOSED
- 1
updated Mar 25, 2019
Changement de dénomination des clones sans VDJ ?

#3890 · opened Apr 02, 2019 by Anne de Septenville Algo 2019.10 !!-bug bio-germlines-pseudo client client-ugly cpp cpp-export
- CLOSED
- 1
- 19
updated Mar 25, 2020
Release 2019.04

#3891 · opened Apr 02, 2019 by Mathieu Giraud Algo 2019.04 Apr 3, 2019 cpp
- CLOSED
- 16
updated May 17, 2019
Roadmap à long terme

#3894 · opened Apr 03, 2019 by Mathieu Giraud #-quality +-roadmap com dev-policy doc support-policy
- CLOSED
- 2
updated Mar 09, 2020
Genescan gris, sur les smaller clones, et partiellement coloré, dans le client : fuse.py / distributions

#3902 · opened Apr 08, 2019 by Mathieu Giraud !-reflexion PAN-Necker Paris-Pitié client-bar client-virtual-clone ec-ngs next-audio user-request
- CLOSED
- 1
- 15
updated Apr 23, 2020
Vérifier qu'un pre-process a le bon nombre de fichiers avant de le soumettre/lancer

#3907 · opened Apr 25, 2019 by Mikaël Salson server server-ergonomy server-pre-process server-task.py
- CLOSED
- 1
- 5
updated Mar 09, 2020
Fusion de reads avec Flash

#3911 · opened May 09, 2019 by Mathieu Giraud Déploiement 2020.06 +-deploy dev-tests-should-get server-config server-docker server-pre-process
- CLOSED
- 1
- 17
updated Mar 20, 2020
Changement d'API pour V-QUEST

#3913 · opened May 13, 2019 by Mikaël Salson #-crisis-prevention *-go client-aligner priority-4-week repseq-IMGT
- CLOSED
- 1
- 0
updated Jun 03, 2019
Release 2019.05

#3914 · opened May 13, 2019 by Mathieu Giraud May 17, 2019
- CLOSED
- 18
updated May 17, 2019
Comparer les temps de vidjil-algo à travers les releases, en relançant tout

#3916 · opened May 20, 2019 by Mathieu Giraud cpp-speed
- CLOSED
- 1
updated May 07, 2020
lien « to ARResT/AssignSubsets »

#3917 · opened May 20, 2019 by Mikaël Salson Lille-LAL-next LIL-Lille bio-CLL client client-ergonomy user-request
- CLOSED
- 1
- 9
updated Oct 04, 2019
Mounted files / network : docker, documentation

#3927 · opened Jun 07, 2019 by Mathieu Giraud *-go Boldrini-Brasil LIL-Lille doc server-mounted-files server-upload user-request
- CLOSED
- 5
updated Mar 23, 2020
conf.js : addons

#3929 · opened Jun 12, 2019 by Mathieu Giraud *-go Boldrini-Brasil client-custom
- CLOSED
- 1
- 0
updated Dec 10, 2019
Genescan gris : visualisation client

#3930 · opened Jun 12, 2019 by Mathieu Giraud !-reflexion client
- CLOSED
- 1
updated Oct 23, 2019
Rapport : avoir un champ de remarque/conclusion

#3938 · opened Jun 20, 2019 by Mikaël Salson Lille-LAL-next Sep 25, 2019 !-easy LIL-Lille bio-control client-rapport feature support-policy user-request
- CLOSED
- 1
- 2
updated Jan 23, 2020
Docker : configuration Nginx non modifiable sans reconstruire l'image

#3941 · opened Jun 21, 2019 by Mikaël Salson !-reflexion server-config server-docker
- CLOSED
- 1
- 5
updated Jul 05, 2019
Implement null for normalized_reads

#3943 · opened Jun 25, 2019 by Mathieu Giraud *-go client client-normalization
- CLOSED
- 2
- 3
updated Jul 15, 2019
Pouvoir calculer des distributions

#3944 · opened Jun 27, 2019 by Thonier Florian app-stats feature server server-fuse
- CLOSED
- 3
- 0
updated Sep 10, 2019
Meilleur gestion des clones virtuels

#3945 · opened Jun 27, 2019 by Thonier Florian avant-les-congés-2019 !-reflexion client client-graph client-virtual-clone doc
- CLOSED
- 1
- 26
updated Oct 29, 2019
should-vdj-to-tap : regex insérant une espace avec une alternative

#3949 · opened Jul 10, 2019 by Mikaël Salson Algo 2019.10 !!-bug *-go dev-tests-curated-vdj
- CLOSED
- 1
- 0
updated Nov 06, 2019
Parser de résultats d'IgReC

#3950 · opened Jul 10, 2019 by Mikaël Salson *-go dev-tests-curated-vdj feature
- CLOSED
- 1
- 2
updated Jul 11, 2019
Displaying all sub-clones does not work

#3951 · opened Jul 11, 2019 by Mikaël Salson !!-bug *-go client client-cloneList client-cluster
- CLOSED
- 1
- 1
updated Oct 11, 2019
should-vdj-to-tap : --ignore_D ne fonctionne pas correctement

#3952 · opened Jul 11, 2019 by Mikaël Salson Algo 2019.10 !!-bug dev-tests-curated-vdj
- CLOSED
- 1
- 0
updated Nov 06, 2019
Graines différentes pour V et J

#3954 · opened Jul 12, 2019 by Mathieu Giraud bio-germlines cpp-aho cpp-heuristic math-stats
- CLOSED
- 1
- 2
updated Mar 26, 2020
Problème d'accès à Vidjil

#3957 · opened Jul 30, 2019 by Anne de Septenville !!-bug !!-crisis server
- CLOSED
- 3
updated Aug 20, 2019
Changement de résultat du lien "to IMGT"

#3958 · opened Jul 31, 2019 by Anne de Septenville !!-bug client client-aligner repseq-IMGT
- CLOSED
- 6
updated Aug 28, 2019
clones virtuels: clusterisation

#3961 · opened Aug 02, 2019 by Thonier Florian *-go client client-virtual-clone
- CLOSED
- 3
updated Oct 23, 2019
clones virtuels : getSize

#3962 · opened Aug 02, 2019 by Thonier Florian client client-virtual-clone
- CLOSED
- 3
updated Oct 23, 2019
Supprimer une ligne intermédaire du multiupload provoque une erreur

#3972 · opened Aug 22, 2019 by Thonier Florian !!-bug REN-Rennes server server-sample-sets server-upload
- CLOSED
- 1
- 4
updated Jun 25, 2020
L'autocomplétion des tags provoque une erreur CORS

#3973 · opened Aug 23, 2019 by Mikaël Salson !!-bug client-autocomplete client-database server-database
- CLOSED
- 1
- 1
updated Sep 04, 2019
Lors d'un hover on reparcourt la liste des clones (updateElemStyle)

#3975 · opened Sep 04, 2019 by Mikaël Salson !-hard client client-speed client-tags dev-tests-watir
- CLOSED
- 1
- 4
updated Dec 26, 2019
Calculer les distributions sur tous les clones, pas sur le top

#3978 · opened Sep 10, 2019 by Mathieu Giraud server-fuse
- CLOSED
- 1
- 1
updated Sep 27, 2019
Analyse FAILED de façon répétée

#3979 · opened Sep 12, 2019 by Anne de Septenville
- CLOSED
- 7
updated Sep 13, 2019
Average length différents suivant les points ?

#3983 · opened Sep 25, 2019 by Mathieu Giraud !-reflexion server-fuse
- CLOSED
- 1
updated Oct 23, 2019
Un test functional test_22_menu_tutorial échoue de temps en temps

#3987 · opened Sep 25, 2019 by Mathieu Giraud !-important dev-tests-watir
- CLOSED
- 1
- 5
updated Oct 07, 2019
Afficher des informations sur tout clone

#3989 · opened Oct 01, 2019 by Mathieu Giraud client priority-1-low
- CLOSED
- 1
- 2
updated Nov 04, 2019
Génération automatique de mots de passes

#3990 · opened Oct 03, 2019 by Thonier Florian client client-ergonomy feature
- CLOSED
- 0
updated Oct 03, 2019
Mécanisme de sélection incohérent en mode histogramme (bar)

#3994 · opened Oct 08, 2019 by Mikaël Salson *-go client client-ergonomy
- CLOSED
- 1
- 0
updated Nov 04, 2019
Genescan gris : afficher le nombre de clones, à l'intérieur d'un smaller clones, dans l'infoline

#3995 · opened Oct 08, 2019 by Mikaël Salson *-go client client-info client-virtual-clone
- CLOSED
- 5
updated Oct 08, 2019
Genescan gris : la boite de recherche ne fonctionne plus

#3996 · opened Oct 08, 2019 by Mikaël Salson !!-bug *-go client-cloneList client-virtual-clone
- CLOSED
- 3
updated Oct 23, 2019
Genescan gris : suite à align avec un smaller clone, les boutons « send to » ne fonctionnent plus

#3997 · opened Oct 08, 2019 by Mikaël Salson !!-bug *-go client client-aligner client-virtual-clone
- CLOSED
- 2
updated Oct 17, 2019
Calcul size_distrib : avec ou sans les clones filtrés ?

#3998 · opened Oct 08, 2019 by Mathieu Giraud !-reflexion
- CLOSED
- 2
updated Oct 16, 2019
Genescan gris et autres samples que le numéro 1

#3999 · opened Oct 08, 2019 by Mathieu Giraud
- CLOSED
- 1
updated Oct 15, 2019
Ne pas ajouter les clones sans séquence dans le segmenteur

#4001 · opened Oct 08, 2019 by Mathieu Giraud
- CLOSED
- 1
updated Oct 08, 2019
Affichage des clones de distribution dans la liste

#4003 · opened Oct 08, 2019 by Mathieu Giraud client-cloneList
- CLOSED
- 2
updated Oct 24, 2019
Présence de séquences dans le segmenter : uniquement has_sequence ?

#4008 · opened Oct 16, 2019 by Mathieu Giraud client-aligner priority-1-low
- CLOSED
- 1
updated Oct 23, 2019
Better document .g files and how to use custom germlines

#4012 · opened Oct 23, 2019 by Mathieu Giraud *-go bio-germlines cpp-options doc
- CLOSED
- 1
updated Aug 27, 2020
algo: output also CDR3 nt sequences ?

#4017 · opened Oct 23, 2019 by Mathieu Giraud Algo 2019.10 !-easy bio-AA cpp
- CLOSED
- 1
- 3
updated Nov 19, 2019