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vidjil
vidjil
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Garder les fichiers bruts tels qu'uploadés ?
#3624
· created
Nov 09, 2018
by
Mikaël Salson
!-reflexion
#-quality
server-hosting
server-pre-process
CLOSED
1
4
updated
Mar 17, 2021
`compute_extra` plante s'il n'y a pas de clone
#3626
· created
Nov 13, 2018
by
Mikaël Salson
!!-bug
*-go
priority-4-week
server
server-task.py
CLOSED
1
0
updated
Nov 13, 2018
Compilation sous Fedora
#3629
· created
Nov 23, 2018
by
Mathieu Giraud
cpp-compiler
CLOSED
9
updated
Nov 23, 2018
Docker : Ne pas modifier les permissions sur les répertoires
#3638
· created
Nov 29, 2018
by
Mikaël Salson
!-important
#-crisis-prevention
server-backup
server-docker
CLOSED
1
2
updated
Dec 03, 2018
Les étiquettes en abscisse de la grille peuvent être rognées
#3641
· created
Nov 30, 2018
by
Mikaël Salson
Amiens-next
Amiens-Nordine
client
client-axis
client-ergonomy
client-grid
client-responsive
user-request
CLOSED
1
1
updated
Dec 06, 2018
Refactor normalisation
#3644
· created
Nov 30, 2018
by
Mathieu Giraud
*-go
Boldrini-Brasil
client-normalization
dev-refactor
CLOSED
2
1
updated
Dec 28, 2018
Extend normalization with custom normalized_reads
#3645
· created
Nov 30, 2018
by
Mathieu Giraud
*-go
Boldrini-Brasil
client
repseq-formats
CLOSED
5
updated
Dec 28, 2018
Pre-/post- options in fuse to implement a post-process
#3647
· created
Nov 30, 2018
by
Mathieu Giraud
*-go
Boldrini-Brasil
server
server-fuse
CLOSED
1
updated
Dec 11, 2020
Enable to switch between normalized_reads and other modes of normalization (including no normalization)
#3648
· created
Nov 30, 2018
by
Mathieu Giraud
Boldrini-Brasil
client
client-normalization
CLOSED
3
updated
Mar 22, 2019
Vidjil-algo : des tests échouent sur plusieurs slaves
#3652
· created
Dec 05, 2018
by
Mikaël Salson
Algo 2018.12
!-important
cpp
cpp-compiler
dev-ci
dev-tests
priority-4-week
CLOSED
13
updated
Mar 05, 2019
.gitlab-ci.yml: releaser les germlines par un job manual depuis gitlab
#3656
· created
Dec 12, 2018
by
Mathieu Giraud
bio-germlines
dev-ci
dev-gitlab
CLOSED
1
0
updated
Oct 20, 2020
Enlever les choix "External" et "Expected" s'il ne sont pas pertinents
#3661
· created
Dec 21, 2018
by
Mathieu Giraud
Boldrini-Brasil
client-normalization
CLOSED
1
0
updated
Dec 31, 2018
Afficher dans getHtmlInfo les valeurs normalized_reads
#3662
· created
Dec 21, 2018
by
Mathieu Giraud
Boldrini-Brasil
client-normalization
CLOSED
1
0
updated
Dec 28, 2018
Réparer une normalization_list affichant la liste des derniers clones normalisés en NORM_EXPECTED
#3666
· created
Dec 28, 2018
by
Mathieu Giraud
*-go
client-normalization
CLOSED
2
3
updated
Jan 16, 2019
clone.getSize2() et normalisation, possible doublon
#3667
· created
Dec 28, 2018
by
Mathieu Giraud
client-grid
client-normalization
dev-dead-code
CLOSED
2
2
updated
Jan 16, 2019
Déployer prod-client sur app par gitlab
#3668
· created
Dec 31, 2018
by
Mathieu Giraud
*-go
dev-gitlab
CLOSED
0
updated
Jan 04, 2019
Mettre à jour d3.js
#3670
· created
Jan 10, 2019
by
Mathieu Giraud
*-go
client
dev-robust
CLOSED
7
updated
Jan 29, 2020
Import .tsv AIRR depuis fuse.py
#3673
· created
Jan 10, 2019
by
Mathieu Giraud
Déploiement 2020.06
Dec 20, 2019
!-important
*-go
repseq-formats-airr
repseq-platform
server-fuse
CLOSED
1
8
updated
Sep 28, 2020
test-browser-unit ne passe pas sur dev
#3679
· created
Jan 15, 2019
by
Mathieu Giraud
dev-gitlab
CLOSED
2
updated
Jan 15, 2019
test-server-unit ne passe pas sur lego
#3682
· created
Jan 15, 2019
by
Mathieu Giraud
dev-gitlab
dev-tests
server
CLOSED
1
2
updated
Jan 17, 2019
Mieux documenter --label
#3684
· created
Jan 17, 2019
by
Mathieu Giraud
Algo 2018.12
*-go
Boldrini-Brasil
cpp
cpp-options
doc
CLOSED
3
updated
Mar 14, 2019
Colorer l'icône de tag multiple lorsque c'est pertinent
#3689
· created
Jan 22, 2019
by
Mathieu Giraud
client
client-ergonomy
priority-1-low
CLOSED
1
1
updated
Feb 11, 2019
Divergence entre vmi.js sur ce dépôt sur le dépôt vmi
#3693
· created
Jan 31, 2019
by
Mikaël Salson
!-important
client
vmi-responsive
CLOSED
6
updated
Feb 13, 2019
Tester Chrome dans notre CI
#3695
· created
Jan 31, 2019
by
Mathieu Giraud
!-important
*-go
dev-ci
dev-tests-watir
CLOSED
1
17
updated
Mar 13, 2019
Le top peut-il descendre en dessous de 50 sans l'intervention de l'utliisateur ?
#3697
· created
Feb 04, 2019
by
Mikaël Salson
+-deploy
LIL-Lille
client
client-ergonomy
CLOSED
2
11
updated
Feb 28, 2019
Docker : Le mot de passe admin web2py n'est pas persistant
#3698
· created
Feb 04, 2019
by
Mikaël Salson
server
server-admin
server-docker
CLOSED
1
7
updated
Jun 01, 2020
FUNCTIONAL_CLIENT_BROWSER_PATH et navigateurs officiellement supportés
#3701
· created
Feb 05, 2019
by
Mathieu Giraud
dev-ci
CLOSED
1
1
updated
Mar 05, 2019
Plus rien n'apparaît dans la liste
#3702
· created
Feb 05, 2019
by
Mathieu Giraud
LIL-Lille
client-cloneList
CLOSED
2
updated
Mar 25, 2019
Erreur lors de l'export monitor
#3705
· created
Feb 05, 2019
by
Thonier Florian
!!-bug
client
client-export
client-rapport
dev-robust
CLOSED
1
updated
Feb 05, 2019
Versionnage des versions de compilateurs utilisés dans l'algo
#3706
· created
Feb 05, 2019
by
Mathieu Giraud
cpp-compiler
dev-ci
CLOSED
3
updated
Jun 19, 2020
Less dynamique ?
#3708
· created
Feb 05, 2019
by
Mathieu Giraud
!-reflexion
client-less-css
wont-fix
CLOSED
0
updated
Feb 05, 2019
CloneDB : afficher le nombre d'échantillons total
#3715
· created
Feb 11, 2019
by
Mikaël Salson
LIL-Lille
app-clonedb
client
client-ergonomy
client-info
user-request
CLOSED
1
0
updated
Nov 21, 2019
Tutoriel : mettre à jour en ajoutant les nouveautés
#3718
· created
Feb 11, 2019
by
Mikaël Salson
com-first-time-user
doc
priority-4-week
CLOSED
12
updated
Nov 22, 2019
Tutoriel : ajouter les choses spécifiques à la CLL
#3719
· created
Feb 11, 2019
by
Mikaël Salson
com-first-time-user
doc
patho-ALL
patho-LLC
CLOSED
1
updated
Mar 15, 2019
Les tests serveurs sont cassés
#3722
· created
Feb 12, 2019
by
Mikaël Salson
!!-broken-ci
!!-bug
!-important
dev-ci
dev-tests-watir
CLOSED
7
updated
Oct 20, 2020
"Unknown nucleotide" dans les tests should-vdj
#3728
· created
Feb 12, 2019
by
Mathieu Giraud
CLOSED
2
updated
Feb 12, 2019
Libération de la mémoire à la fin de Aho
#3729
· created
Feb 12, 2019
by
Mathieu Giraud
cpp-mem
cpp-speed
dev-policy
CLOSED
1
6
updated
Mar 04, 2019
Compare sample ne montre pas l'ensemble des données disponibles
#3750
· created
Feb 27, 2019
by
Thonier Florian
!!-bug
server-compare-samples
CLOSED
4
updated
Feb 28, 2019
Utiliser une version fixe de Web2py
#3752
· created
Feb 27, 2019
by
Mikaël Salson
!-reflexion
#-certification
dev-policy
dev-robust
server
CLOSED
1
0
updated
Feb 27, 2019
Les séquences ne sont plus triées par abondance dans le segmenteur
#3759
· created
Feb 28, 2019
by
Mikaël Salson
!!-bug
*-go
+-working
LIL-Lille
client
client-aligner
client-ergonomy
dev-tests
CLOSED
1
1
updated
Feb 28, 2019
Retirer VIDJIL_DEFAULT_OPTIONS
#3762
· created
Feb 28, 2019
by
Mathieu Giraud
cpp
dev-tests-should-get
CLOSED
1
3
updated
Apr 26, 2019
SampleReads : échantillon aléatoire des reads.
#3764
· created
Feb 28, 2019
by
Mikaël Salson
!-reflexion
*-go
Paris-Pitié
cpp
cpp-representative
CLOSED
1
6
updated
Jul 28, 2020
Tester d'anciens navigateurs sur un slave à part ?
#3765
· created
Feb 28, 2019
by
Mathieu Giraud
!-reflexion
dev-ci
dev-tests-watir
CLOSED
1
0
updated
Oct 04, 2019
Release 2019.03 (recopier sur bioinfo)
#3766
· created
Mar 01, 2019
by
Mathieu Giraud
*-go
cpp
CLOSED
25
updated
May 07, 2020
CloneDB : mise à jour sur vdb et lil
#3767
· created
Mar 01, 2019
by
Mathieu Giraud
Apr 5, 2019
app-clonedb
server-hosting
CLOSED
3
updated
Feb 26, 2020
Mettre Jenkins sur une autre branche que dev ?
#3768
· created
Mar 01, 2019
by
Mathieu Giraud
dev-ci
CLOSED
4
updated
Aug 27, 2020
Jenkins: enlever Vidjil-{coverage,valgrind-unit} ?
#3769
· created
Mar 01, 2019
by
Mathieu Giraud
*-go
dev-ci
CLOSED
7
updated
Mar 05, 2019
vidjil-all-slaves cassé
#3771
· created
Mar 04, 2019
by
Mathieu Giraud
!!-broken-ci
CLOSED
4
updated
Oct 20, 2020
-c designations
#3772
· created
Mar 05, 2019
by
Mathieu Giraud
Algo 2018.12
bikeshedding
cpp-options
doc
support-policy
CLOSED
1
3
updated
Mar 06, 2019
Aho et stanford-no-cd.should-get
#3773
· created
Mar 05, 2019
by
Mathieu Giraud
CLOSED
1
6
updated
Mar 05, 2019
Les tests fonctionnels client ne plantent pas lorsqu'un test échoue
#3774
· created
Mar 05, 2019
by
Mikaël Salson
dev-tests
dev-tests-watir
CLOSED
8
updated
Jun 18, 2020
Déploiement 2019.03, -c designations et options names
1 of 2 tasks completed
#3778
· created
Mar 06, 2019
by
Mathieu Giraud
+-deploy
app-analyze
server
CLOSED
5
updated
Mar 15, 2019
should-vdj-to-tap: est-ce que `--ignore_N` fonctionne correctement ?
#3784
· created
Mar 07, 2019
by
Mikaël Salson
!!-bug
dev-tests-curated-vdj
CLOSED
2
1
updated
Oct 24, 2019
Combo -FaW obsolète
#3785
· created
Mar 08, 2019
by
Mathieu Giraud
Algo 2018.12
bikeshedding
cpp-options
doc
server-task.py
CLOSED
1
4
updated
Mar 12, 2019
FreeBSD cassé, timeout should
#3789
· created
Mar 12, 2019
by
Mathieu Giraud
Algo 2018.12
!!-broken-ci
CLOSED
3
updated
Oct 20, 2020
valgrind-functional et representative-random-read-chooser.should-get
#3792
· created
Mar 12, 2019
by
Mathieu Giraud
!!-bug
cpp-mem
cpp-representative
CLOSED
17
updated
Mar 14, 2019
A quoi sert la div data de la div liste
#3793
· created
Mar 13, 2019
by
Thonier Florian
!!-bug
!!-crisis
LIL-Lille
client
client-design
client-ergonomy
priority-5-today
CLOSED
6
updated
Mar 13, 2019
Pertinence du format .vdj.fa et documentation
#3795
· created
Mar 14, 2019
by
Mathieu Giraud
Algo 2020.08
bikeshedding
doc
repseq-formats
CLOSED
1
5
updated
Jul 30, 2020
Docker vidjil/client : les fichiers de configuration de l'hôte sont-ils pris en compte ?
#3797
· created
Mar 14, 2019
by
Mikaël Salson
!!-bug
server-admin
server-docker
CLOSED
1
updated
Feb 09, 2021
clang++-4.0 pas présent
#3798
· created
Mar 14, 2019
by
Mathieu Giraud
dev-ci
CLOSED
3
updated
Mar 19, 2019
Tutoriel serveur
#3800
· created
Mar 14, 2019
by
Mathieu Giraud
doc-tutorial
priority-5-today
CLOSED
2
updated
Sep 27, 2020
Le menu upload prend toute la largeur, et même plus
#3805
· created
Mar 15, 2019
by
Mikaël Salson
!!-bug
!-important
client
client-ergonomy
client-less-css
client-ugly
priority-4-week
vmi-responsive
CLOSED
1
5
updated
Mar 28, 2019
get reads: mettre un cursor:pointer sur l'icône
#3808
· created
Mar 17, 2019
by
Mathieu Giraud
*-go
client-less-css
CLOSED
1
0
updated
Mar 18, 2019
filtrer pour ne conserver que les clones taggés
#3810
· created
Mar 18, 2019
by
Thonier Florian
!-reflexion
client
client-ergonomy
feature
CLOSED
1
updated
Mar 19, 2019
Les warnings ne sont pas produits avec `-c designations`
#3811
· created
Mar 18, 2019
by
Mikaël Salson
Algo 2020.06
!!-bug
!-easy
*-go
client-warning
cpp
cpp-finesegmenter
CLOSED
2
1
updated
Jun 10, 2020
Document diversity measures
#3812
· created
Mar 18, 2019
by
Mathieu Giraud
cpp
doc
math-stats
CLOSED
0
updated
Mar 18, 2019
Lien vers le gitlab dans le menu help
#3820
· created
Mar 18, 2019
by
Thonier Florian
client
com
dev-gitlab
feature
user-request
CLOSED
1
1
updated
Apr 02, 2019
Ajout de métadonnées: des traitement avec les dates associées
#3823
· created
Mar 18, 2019
by
Thonier Florian
CLOSED
1
updated
Mar 19, 2019
Calculer l'index de Morisita
#3830
· created
Mar 19, 2019
by
Thonier Florian
Barcelona-clinic
LIL-Immuno
bio-immuno
cpp
essen-uk
feature
math-stats
server-fuse
CLOSED
1
9
updated
Aug 07, 2020
Avoir des icones avec les informations à divers endroits de l'intercace
#3831
· created
Mar 19, 2019
by
Thonier Florian
CLOSED
1
updated
Mar 19, 2019
Clone en R2 perdu en R1+R2 (+R2)
#3833
· created
Mar 19, 2019
by
Mathieu Giraud
Mar 29, 2019
!-important
TOU-Toulouse
bio-analyze-more
com-vw-vidjil-workshop
server-pre-process
CLOSED
1
11
updated
Mar 28, 2019
Bug avce la fonction align sur le segmenteur
#3834
· created
Mar 19, 2019
by
Thonier Florian
CLOSED
0
updated
Mar 19, 2019
CLI11 / vidjil-algo: --options in.json
1 of 2 tasks completed
#3837
· created
Mar 19, 2019
by
Mathieu Giraud
Algo 2019.04
*-go
cpp
cpp-options
CLOSED
1
1
5
updated
Apr 02, 2019
Flexible strategy for MRD (and other things)
#3838
· created
Mar 19, 2019
by
Mathieu Giraud
Boldrini-Brasil
bio-mrd
bio-spikes
cpp
server-config
CLOSED
9
updated
Oct 14, 2019
vidjil-algo: parse 'labels' in `config`
#3839
· created
Mar 19, 2019
by
Mathieu Giraud
Algo 2019.04
*-go
cpp
cpp-options
CLOSED
1
5
updated
Apr 02, 2019
Envoyer les emails des participants du workshop
#3841
· created
Mar 19, 2019
by
Thonier Florian
Mar 20, 2019
CLOSED (MOVED)
0
updated
Mar 19, 2019
Exporter tous les clones au format AIRR
#3842
· created
Mar 19, 2019
by
Thonier Florian
Déploiement 2020.06
!-easy
*-go
+-deploy
LIL-Immuno
bio-immuno
client-export
essen-uk
feature
server-config
server-speed
user-request
CLOSED
18
updated
Apr 10, 2020
SAvoir si un clone est relié à un antigen
#3843
· created
Mar 19, 2019
by
Thonier Florian
CLOSED
0
updated
Mar 19, 2019
Exporter les clones dans un format compatible avec d'autres bases de données
#3844
· created
Mar 19, 2019
by
Thonier Florian
Mar 19, 2021
CLOSED
1
updated
Mar 19, 2019
Permettre de labeliser un set de clones
#3845
· created
Mar 19, 2019
by
Thonier Florian
CLOSED
1
updated
Mar 20, 2019
clusteriser dans l'intrerface sur la séquence en acides aminés.
#3847
· created
Mar 19, 2019
by
Thonier Florian
bio-AA
client-cluster
essen-uk
feature
CLOSED
2
updated
Mar 21, 2019
Index pour montrer la proportion d'un répertoire à se reconstruire
#3848
· created
Mar 19, 2019
by
Thonier Florian
*-too-vague
CRE-Créteil
bio-diversity
patho-CAR-T
CLOSED
3
updated
Jan 27, 2021
Sonar ?
#3858
· created
Mar 21, 2019
by
Mathieu Giraud
dev-ci
dev-code-quality
dev-policy
CLOSED
1
updated
Aug 27, 2020
--no-windows, --no-vidjil, --no-airr ?
#3861
· created
Mar 22, 2019
by
Mathieu Giraud
!-easy
Paris-Pitié
cpp
cpp-export
cpp-options
CLOSED
1
10
updated
Jul 28, 2020
Le bouton log a disparu
#3863
· created
Mar 22, 2019
by
Thonier Florian
!!-bug
client
CLOSED
2
updated
Mar 25, 2019
Permettre depuis un run de sauter au patient parent d'un sample
#3864
· created
Mar 22, 2019
by
Thonier Florian
client
client-ergonomy
feature
CLOSED
1
updated
Mar 25, 2019
Avoir par défaut la séquence représentative calculée sur un échantillon aléatoire de reads
#3866
· created
Mar 25, 2019
by
Mikaël Salson
Algo 2019.05
!-important
*-go
+-deploy
cpp
cpp-representative
CLOSED
21
updated
May 24, 2019
Seul les tableaux devrait être scrollables
#3867
· created
Mar 25, 2019
by
Thonier Florian
LIL-Lille
client-design
server
server-ergonomy
user-request
CLOSED
2
3
updated
Mar 30, 2020
Trier automatiquement les clones de la liste
#3870
· created
Mar 25, 2019
by
Thonier Florian
REN-Rennes
client
client-cloneList
client-ergonomy
client-settings
user-request
CLOSED
1
5
updated
Mar 18, 2020
Ajouter une etiquette "dimers" dans les tags de clones
#3871
· created
Mar 25, 2019
by
Thonier Florian
!-reflexion
client
client-ergonomy
feature
CLOSED
1
updated
Mar 25, 2019
My Account: Pouvoir accéder facilement aux dernières analyses effectuées
#3880
· created
Mar 29, 2019
by
Anne de Septenville
server-my-account
CLOSED
1
4
updated
Dec 10, 2020
Testing spike-normalization.py
#3886
· created
Apr 02, 2019
by
Mathieu Giraud
Apr 24, 2019
bio-mrd
bio-spikes
client-normalization
dev-tests-should-get
CLOSED
6
updated
Jan 19, 2021
Changement de dénomination des clones sans VDJ ?
#3890
· created
Apr 02, 2019
by
Anne de Septenville
Algo 2019.10
!!-bug
bio-germlines-pseudo
client
client-ugly
cpp
cpp-export
CLOSED
1
19
updated
Mar 25, 2020
Release 2019.04
#3891
· created
Apr 02, 2019
by
Mathieu Giraud
Algo 2019.04
Apr 3, 2019
cpp
CLOSED
16
updated
May 17, 2019
Roadmap à long terme
#3894
· created
Apr 03, 2019
by
Mathieu Giraud
#-quality
+-roadmap
com
dev-policy
doc
support-policy
CLOSED
2
updated
Mar 09, 2020
Genescan gris, sur les smaller clones, et partiellement coloré, dans le client : fuse.py / distributions
#3902
· created
Apr 08, 2019
by
Mathieu Giraud
!-reflexion
PAN-Necker
Paris-Pitié
client-bar
client-virtual-clone
ec-ngs
next-audio
user-request
CLOSED
1
15
updated
Apr 23, 2020
Clustériser sur la représentative et non pas sur la fenêtre
#3904
· created
Apr 17, 2019
by
Mathieu Giraud
!-reflexion
cpp-cluster
cpp-representative
CLOSED
2
updated
Dec 16, 2020
Vérifier qu'un pre-process a le bon nombre de fichiers avant de le soumettre/lancer
#3907
· created
Apr 25, 2019
by
Mikaël Salson
server
server-ergonomy
server-pre-process
server-task.py
CLOSED
1
5
updated
Mar 09, 2020
Avoir des germline de poulet
#3910
· created
May 02, 2019
by
Thonier Florian
Algo 2021.03
bio-germlines
bio-rnaseq
bio-species
com-first-time-user
feature
CLOSED
2
8
updated
Apr 08, 2021
Fusion de reads avec Flash
#3911
· created
May 09, 2019
by
Mathieu Giraud
Déploiement 2020.06
+-deploy
dev-tests-should-get
server-config
server-docker
server-pre-process
CLOSED
1
17
updated
Mar 20, 2020
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