Issues · vidjil / vidjil

New issue

Gaps affines pour le FineSegmenter

#2768 · created Oct 31, 2017 by Mathieu Giraud cpp cpp-costs cpp-finesegmenter
- 2
updated Mar 16, 2021
Est-ce raisonnable d'avoir load_backup sur le web ?

#2769 · created Oct 31, 2017 by Mathieu Giraud !-security *-go doc server-admin
- 2
updated Sep 23, 2020
Boucle pour les notifications et appel récursif dans setTimeout()

#2770 · created Nov 02, 2017 by Mathieu Giraud client client-notifications client-speed
- 0
updated Oct 11, 2018
Le découpage des méthodes "update" est-il judicieux ?

#2771 · created Nov 03, 2017 by Ryan Herbert !-hard !-reflexion client client-speed dev-refactor
- CLOSED
- 1
updated Nov 08, 2017
contenu du json retour de get_active_notification

#2772 · created Nov 09, 2017 by Ghost User client client-notifications
- 1
updated Oct 11, 2018
Décalage dans les login de connexion

#2773 · created Nov 10, 2017 by Thonier Florian !!-bug client server
- 3
updated Nov 23, 2017
Tip of the day: image

#2774 · created Nov 10, 2017 by Mathieu Giraud com-first-time-user doc
- CLOSED
- 6
updated Nov 20, 2017
Tip of the day: format et récupération des données

#2775 · created Nov 14, 2017 by Ryan Herbert client
- CLOSED
- 1
updated Nov 17, 2017
Mettre à jour le tutoriel pour les TPs

#2776 · created Nov 14, 2017 by Mathieu Giraud Web 2017.11 Nov 20, 2017 com-first-time-user com-vw-vidjil-workshop doc
- CLOSED
- 10
updated Nov 20, 2017
API URL: plot, rendre le grid optionnel

#2777 · created Nov 14, 2017 by Mathieu Giraud client-api
- CLOSED
- 0
updated Nov 19, 2017
Renommer `?sample_set_id=` en `?set=`

#2778 · created Nov 14, 2017 by Mathieu Giraud Web 2017.11 *-go bikeshedding client-api
- CLOSED
- 2
updated Nov 19, 2017
Ne mettre que set= et pas patient_id= en plus

#2780 · created Nov 14, 2017 by Mathieu Giraud client-api
- CLOSED
- 0
updated Nov 19, 2017
Renommer gene_v en v, gene_j en j, bikeshedding d'autres axes

#2781 · created Nov 14, 2017 by Mathieu Giraud Web 2017.11 bikeshedding client-grid
- CLOSED
- 2
updated Nov 19, 2017
Compare patients et URL API

#2782 · created Nov 14, 2017 by Mathieu Giraud Web 2018.01 client-api
- 1
updated Mar 21, 2018
URL API: ne mettre "plot" que quand lorsque ce n'est pas le défaut

#2783 · created Nov 14, 2017 by Mathieu Giraud Web 2017.11 client-api
- CLOSED
- 0
updated Nov 19, 2017
Police de caractères

#2784 · created Nov 15, 2017 by Mathieu Giraud bikeshedding client client-design client-i18n
- 4
updated Apr 15, 2021
Mieux afficher les erreurs serveur et permettre aux utilisateurs de nous contacter

#2785 · created Nov 15, 2017 by Mathieu Giraud #-quality *-go com
- 1
updated Nov 15, 2017
tsne.js prend un peu de temps

#2786 · created Nov 15, 2017 by Thonier Florian !!-bug client
- 2
updated Nov 17, 2017
plot by similarity and locus se comporte etrangement lorqu'il n'y a qu'un seul clone

#2787 · created Nov 15, 2017 by Thonier Florian !!-bug client client-api client-graph
- 2
updated Nov 15, 2017
Les axes ne devraient pas toujours mettre les 'undefined' à la valeur max

#2788 · created Nov 15, 2017 by Thonier Florian !!-bug !-important client client-axis client-graph
- 6
updated Nov 15, 2017
Short name et VDJ/VDDJ : réduire le seuil de 6 ?

#2789 · created Nov 15, 2017 by Thonier Florian bikeshedding client client-cloneList client-info client-responsive priority-1-low wont-fix
- CLOSED
- 11
updated Aug 07, 2018
Samples dans plusieurs sample sets et .analysis : documenter

#2790 · created Nov 15, 2017 by Mathieu Giraud doc server-fuse server-sample-sets
- 3
updated Nov 17, 2017
Le nom détaillé du clone disparait sur des petites résolutions

#2791 · created Nov 15, 2017 by Mathieu Giraud client client-responsive
- 0
updated Nov 15, 2017
URL : rewrite nginx pour de belles URL

#2792 · created Nov 15, 2017 by Mathieu Giraud *-go client-api server-hosting
- CLOSED
- 1
- 15
updated Jun 18, 2020
URL : /?set=1471 ouvre une page de la database sur le bon patient/run/set

#2793 · created Nov 15, 2017 by Mathieu Giraud *-go client-api
- 1
updated Oct 02, 2018
API URL: d'autres services utiles, côté serveur

#2794 · created Nov 15, 2017 by Mathieu Giraud !-reflexion client-api server server-admin
- 1
updated Nov 16, 2017
problème d'accès à vidjil ce matin.

#2795 · created Nov 16, 2017 by Ghost User !!-bug !!-crisis
- CLOSED
- 1
updated Nov 16, 2017
URL: que se passe-t-il en mode déconnecté de la db, sans serveur ?

#2796 · created Nov 17, 2017 by Mathieu Giraud client-api
- 3
updated Nov 18, 2017
Mettre à jour (et renommer) format-analysis.org

#2797 · created Nov 17, 2017 by Mathieu Giraud Web 2018.01 repseq-formats repseq-platform
- 1
updated Sep 07, 2018
Interaction avec bioinfos durant le workshop

#2798 · created Nov 17, 2017 by Mathieu Giraud Web 2017.11 client-api com-vw-vidjil-workshop repseq-formats repseq-platform server-api
- CLOSED
- 1
updated Nov 29, 2017
Less et couleurs en minuscules

#2799 · created Nov 17, 2017 by Mathieu Giraud client-less-css priority-1-low
- CLOSED
- 1
- 2
updated Feb 05, 2019
Tip of the day: pouvoir voir le "next tip"

#2800 · created Nov 17, 2017 by Mathieu Giraud com-first-time-user
- CLOSED
- 1
updated Nov 17, 2017
Tip of the day : ne pas l'afficher si on n'est pas loggué

#2801 · created Nov 17, 2017 by Mathieu Giraud com-first-time-user doc
- 0
updated Nov 20, 2017
Tip of the day : tips pour mettre en ligne

#2802 · created Nov 17, 2017 by Mathieu Giraud Web 2017.11 com com-vw-vidjil-workshop
- CLOSED
- 1
updated Nov 20, 2017
Tip ot the day : 'tips.js' pas trouvé sur dev

#2803 · created Nov 17, 2017 by Mathieu Giraud
- CLOSED
- 1
updated Nov 17, 2017
Autocomplete.js et ES6

#2804 · created Nov 17, 2017 by Mathieu Giraud Web 2017.11 dev-tests
- CLOSED
- 6
updated Nov 20, 2017
Export fasta : un test fonctionnel non externe échoue de manière non reproductible

#2805 · created Nov 18, 2017 by Mathieu Giraud client-export dev-tests-watir
- CLOSED
- 3
updated Feb 05, 2019
Changement de window.title

#2806 · created Nov 18, 2017 by Mathieu Giraud client dev-tests-watir
- 0
updated Nov 18, 2017
URL: le plot preset devrait être correctement initialisé, ou au moins non initialisé à 0

#2807 · created Nov 18, 2017 by Mathieu Giraud client-api priority-1-low
- CLOSED
- 1
updated Nov 19, 2017
Avoir des sorties Watir plus explicites

#2808 · created Nov 19, 2017 by Mathieu Giraud dev-ci dev-tests-watir
- CLOSED
- 2
updated Nov 13, 2020
Un test external IMGT test_10bis_imgt_post échoue de temps en temps

#2809 · created Nov 19, 2017 by Mathieu Giraud *-go dev-tests-watir repseq-IMGT
- 1
updated Oct 29, 2019
Multiple scatterplot : créer une seule fois sp2

#2810 · created Nov 19, 2017 by Mathieu Giraud client-grid dev-refactor
- 0
updated Oct 13, 2020
Rajouter des tests fonctionnels pour les scatterplots multiples

#2811 · created Nov 20, 2017 by Mathieu Giraud *-go dev-tests-watir
- 1
updated Nov 20, 2017
Les axes "productivity" et "locus" sont mal affichés en mode bar

#2812 · created Nov 20, 2017 by Mathieu Giraud Web 2018.01 !!-bug *-go client client-axis
- CLOSED
- 3
updated Jan 17, 2019
Le preset "V/J alleles" ne fonctionne pas

#2813 · created Nov 20, 2017 by Mathieu Giraud !!-bug client client-axis
- CLOSED
- 2
updated Nov 20, 2017
MiXCR et "clone average read length"

#2814 · created Nov 20, 2017 by Mathieu Giraud *-go repseq-mixcr repseq-platform
- 1
updated Nov 29, 2017
Hover sur la quantité / + / - pourrait indiquer "xxx reads"

#2815 · created Nov 20, 2017 by Mathieu Giraud *-go client-aligner client-cloneList client-ergonomy feature priority-1-low
- 1
updated Nov 20, 2017
Cluster devrait être grisé quand il est inutilisable

#2816 · created Nov 20, 2017 by Mathieu Giraud *-go client client-ergonomy
- 0
updated Nov 20, 2017
Export SVG (plot) est incorrect en multi-locus sur une vue par locus

#2817 · created Nov 20, 2017 by Mikaël Salson !!-bug *-go client client-export
- 3
updated Jul 05, 2018
Pouvoir effectuer des analyses de translocations sur des séquences arbitraires

#2818 · created Nov 21, 2017 by Ryan Herbert PAR-Debré bio-analyze-more bio-germlines com-vw-vidjil-workshop user-request
- 4
updated Apr 03, 2019
Export : donner les informations d'IMGT dans le rapport ?

#2819 · created Nov 21, 2017 by Mikaël Salson LIL-Lille client client-export client-rapport com-vw-vidjil-workshop feature repseq-IMGT user-request
- 1
updated Apr 05, 2018
Détecter les primers dimers

#2820 · created Nov 21, 2017 by Mathieu Giraud LIL-Immuno PAR-Debré Paris-Pitié bio-control bio-primers client-warning cpp cpp-heuristic user-request
- 1
- 9
updated Jun 18, 2020
La select box des axes n'affiche pas toujours la bonne valeur

#2821 · created Nov 21, 2017 by Ryan Herbert !!-bug client client-axis
- 0
updated Nov 21, 2017
Permettre de merger sur la séquence en AA

#2822 · created Nov 21, 2017 by Thonier Florian !-reflexion client
- 9
updated Sep 25, 2020
assert.equal et autres dans Watir ?

#2823 · created Nov 21, 2017 by Mathieu Giraud dev-ci dev-tests dev-tests-watir
- 0
updated Nov 30, 2017
Tutoriel : dire de filtrer par #Demo

#2824 · created Nov 21, 2017 by Mikaël Salson com-vw-vidjil-workshop doc doc-tutorial
- CLOSED
- 1
- 0
updated Sep 27, 2020
Coût du FineSegmenter : est-on trop généreux avec les mismatches ?

#2825 · created Nov 21, 2017 by Mikaël Salson Algo -- Important !!-bug !-important BRU-Bruxelles PAR-Debré cpp-costs cpp-finesegmenter dev-tests-should-get
- 3
updated Jun 26, 2018
Pouvoir scroller le dialogue info

#2826 · created Nov 21, 2017 by Ryan Herbert client client-info client-responsive
- 0
updated Feb 27, 2019
Le 'spinner' de requête tourne en permanence

#2827 · created Nov 21, 2017 by Ryan Herbert client-ergonomy client-ugly
- CLOSED
- 3
updated Jan 18, 2018
Export csv AIRR depuis l'algo

#2828 · created Nov 21, 2017 by Mathieu Giraud Algo 2018.09 Oct 27, 2018 client-export cpp cpp-export repseq-community repseq-formats repseq-formats-airr repseq-platform user-request
- CLOSED
- 8
updated Oct 24, 2018
Permutation entre nombres de délétions ?

#2829 · created Nov 21, 2017 by Mathieu Giraud cpp cpp-finesegmenter dev-tests-should-get
- 2
updated Nov 21, 2017
Faire une médiane sur une normalisation multiple

#2830 · created Nov 21, 2017 by Ryan Herbert BRU-Bruxelles MON-Monza client-normalization ec-ngs math-stats user-request
- 3
updated Dec 28, 2018
bug lors des click sur les locus pour les switcher

#2831 · created Nov 21, 2017 by Thonier Florian !!-bug LIL-Lille client client-menu
- 2
updated Jan 10, 2019
le graph timeline ne se remplit plus si on switch les locus

#2832 · created Nov 21, 2017 by Thonier Florian !!-bug LIL-Lille client client-graph client-menu
- 4
updated Jan 10, 2019
le gif de chargement tourne en boucle

#2833 · created Nov 21, 2017 by Ghost User !!-bug client
- CLOSED
- 1
updated Nov 21, 2017
Explication sur les alerte en selected reads

#2834 · created Nov 21, 2017 by Thonier Florian !-reflexion client client-menu
- 0
updated Nov 21, 2017
Barre de défilement dans le segmenteur sous Safari

#2835 · created Nov 21, 2017 by Ghost User !!-bug client-aligner
- 2
updated Nov 22, 2017
Profils pour divers maladies/usages / Presets for different pathologies/uses

#2836 · created Nov 21, 2017 by Thonier Florian !-reflexion BRU-Bruxelles LIL-Lille TOU-Toulouse client client-menu com-vw-vidjil-workshop user-request
- 7
updated Dec 04, 2020
Pouvoir unifier le short_name et l'affichage des insert

#2838 · created Nov 21, 2017 by Thonier Florian !-reflexion wont-fix
- CLOSED
- 3
updated Aug 07, 2018
Tuto : déplacer l'utilisation des shortcut H et G

#2839 · created Nov 21, 2017 by Thonier Florian *-go client client-keyboard doc doc-tutorial
- CLOSED
- 1
- 3
updated Sep 27, 2020
A quoi sert le bouton tag visibility ?

#2840 · created Nov 21, 2017 by Thonier Florian LIL-Lille client client-menu client-tags client-ugly dev-dead-code
- CLOSED
- 1
updated Feb 16, 2018
cluster par v/5' et j/3' ne marche qu'en partie

#2841 · created Nov 21, 2017 by Ghost User !!-bug client client-menu
- 4
updated Nov 22, 2017
le color by reste sur la dernière valeur selectionnée lors d'un reload de la page (mais ne l'applique pas)

#2842 · created Nov 21, 2017 by Thonier Florian !!-bug !-reflexion client client-menu
- 1
updated Nov 29, 2017
La valeur des paramètres n'est pas forcement celle appliquée lors d'un chargement d'analyse

#2843 · created Nov 21, 2017 by Thonier Florian !-reflexion client client-menu
- 0
updated Nov 22, 2017
Un focus sur un clone mergé ne permet plus de voir ces sous-clone dans le grid

#2845 · created Nov 21, 2017 by Thonier Florian !-reflexion client client-filter client-grid
- 1
updated Nov 21, 2017
Le cluster par V ne marche pas

#2846 · created Nov 21, 2017 by Thonier Florian !!-bug client client-menu client-virtual-clone
- 1
updated Nov 21, 2017
Problème avec align quand on change de patient : `this.sequence` dans Segmenter n'est pas mise à jour

#2847 · created Nov 21, 2017 by Thonier Florian !!-bug !-important *-go LIL-Lille client client-aligner server-cgi user-request
- CLOSED
- 5
updated Apr 05, 2018
Avoir l'info du login/logout toujours visible en haut à droite

#2848 · created Nov 21, 2017 by Thonier Florian !-reflexion client-ergonomy needs-ux server-auth
- CLOSED
- 1
- 3
updated Nov 19, 2020
Incident 2017-11-22 : Upload impossible ?

#2849 · created Nov 22, 2017 by Mathieu Giraud !!-crisis PAN-Necker server server-upload
- CLOSED
- 1
- 16
updated Feb 16, 2018
clique sur les bouton cluster by n'enleve pas le clustering

#2850 · created Nov 22, 2017 by Ghost User !-reflexion client client-ergonomy client-menu
- 1
updated Nov 22, 2017
Coût de segmentation : pas de coût spécifique aux homopolymères par défaut

#2851 · created Nov 22, 2017 by Mikaël Salson Algo 2017.11 *-go NAG-Nagoya PAN-Necker Paris-Pitié cpp cpp-costs cpp-finesegmenter cpp-finesegmenter-D cpp-options sequencers-Ion
- CLOSED
- 1
- 11
updated Nov 30, 2017
"Satellites" et clustérisation

#2852 · created Nov 22, 2017 by Mathieu Giraud !-reflexion Paris-Pitié bio-control
- 1
updated Nov 22, 2017
Bascule entre plusieurs jeux de données, on doit se souvenir des .analysis et des paramètres d'affichage (nb de clones, vue en cours)

#1013 · created Nov 29, 2016 by Vidjil Team old_tracker !-hard *-go client feature priority-3-month repseq-Nikos wont-fix
- CLOSED
- 1
updated Mar 19, 2019
Dégradé gris léger "résolution d'affichage" pour chaque sample

#988 · created Nov 29, 2016 by Vidjil Team *-go client client-graph priority-2
- 3
updated Feb 25, 2020
sélection rectangulaire sur le graph, pb si on dépasse du bord

#971 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client client-grid feature priority-2
- CLOSED
- 2
updated Nov 20, 2018
Calculer valeur entière d'un k-mer à partir de la précédente et non pas recalculer from scratch

#915 · created Nov 29, 2016 by Vidjil Team *-go cpp-heuristic cpp-speed priority-3-month
- CLOSED
- 3
updated Feb 21, 2020
Différencier les réarrangements incomplets et pseudo-incomplets

#2853 · created Nov 22, 2017 by Mikaël Salson !-reflexion NAG-Nagoya bio-capture bio-e-value cpp cpp-finesegmenter feature user-request
- 3
updated Dec 12, 2018
Tuto : questions et remarques diverses

#2854 · created Nov 22, 2017 by Tatiana Rocher
- CLOSED
- 4
updated Nov 22, 2017
Plusieurs configurations pour les coûts

#2856 · created Nov 22, 2017 by Mathieu Giraud cpp-costs cpp-finesegmenter cpp-finesegmenter-D cpp-options server-config
- 0
updated Nov 27, 2017
Rapport personnalisé

#2857 · created Nov 22, 2017 by Tatiana Rocher
- CLOSED
- 1
updated Nov 22, 2017
Rapport : découpage des séquences par IMGT et Vidjil

#2858 · created Nov 22, 2017 by Tatiana Rocher
- CLOSED
- 1
updated Nov 22, 2017
Terminologie des locus : documenter le +

#2859 · created Nov 22, 2017 by Mathieu Giraud Web 2021.05 *-go bikeshedding bio-germlines doc
- 1
updated Apr 19, 2021
Avoir une probabilité, pour chaque nucléotide, d'être dans un V, un D ou un J

#2860 · created Nov 22, 2017 by Mikaël Salson !-reflexion client client-aligner client-ergonomy cpp cpp-finesegmenter
- 1
updated Nov 13, 2020
Tuto : signification du '+' dans IGH+

#2861 · created Nov 22, 2017 by Tatiana Rocher
- CLOSED
- 1
updated Nov 22, 2017
Tags et couleurs

#2862 · created Nov 22, 2017 by Tatiana Rocher bikeshedding client client-cloneList
- 1
updated Oct 21, 2019
Tuto : allèle "only not *01"

#2863 · created Nov 22, 2017 by Tatiana Rocher *-go doc doc-tutorial
- CLOSED
- 1
- 1
updated Sep 27, 2020
Doc/Tuto : à partir de quel seuil apparaissent les warnings ?

#2864 · created Nov 22, 2017 by Tatiana Rocher PAR-Debré bio-control client client-warning doc doc-tutorial
- 0
updated Sep 18, 2020
Tuto : annotations dans la marge trop petites

#2865 · created Nov 22, 2017 by Tatiana Rocher *-go doc doc-tutorial
- CLOSED
- 1
- 1
updated Sep 27, 2020
Tuto : le nom "read" est masculin

#2866 · created Nov 22, 2017 by Tatiana Rocher bikeshedding
- 1
updated Nov 22, 2017
Tuto : clone V11-J3 introuvable

#2867 · created Nov 22, 2017 by Tatiana Rocher *-go doc doc-tutorial
- 0
updated Sep 18, 2020