Issues · vidjil / vidjil

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export anaylsis : fichier sans le nom du patient/fichier original

#1624 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug
- 0
updated Nov 30, 2016
Heuristique : analyser les germlines non recombinés

#1628 · created Nov 29, 2016 by Vidjil Team !-important bio-analyze-more bio-control bio-germlines-pseudo cpp-heuristic priority-2
- 1
updated Dec 13, 2017
Avoir les locus complets quelque part

#1629 · created Nov 29, 2016 by Vidjil Team bio-analyze-more bio-control bio-germlines priority-2
- 0
updated Apr 17, 2018
patient/stats ne retourne pas forcément le bon fichier fused

#1632 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug app-stats
- 0
updated Dec 04, 2020
day after first sample déclenché de manière trop rapide ?

#1637 · created Nov 29, 2016 by Vidjil Team client client-graph priority-2
- 2
updated Sep 03, 2020
Replicats pour gommer des erreurs de PCR/séquençage

#1638 · created Nov 29, 2016 by Vidjil Team old_tracker Paris-Pitié bio-control feature priority-2
- 1
updated Jul 30, 2020
Changer germline/gens : marqueur visuel/dynamique

#1643 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion
- 0
updated Nov 30, 2016
Stats sur les clones

#1644 · created Nov 29, 2016 by Vidjil Team app-stats com-paper feature priority-3-month server
- 12
updated May 22, 2017
Convention_de_codage ou ConventionDeCodage ?

#1650 · created Nov 29, 2016 by Vidjil Team old_tracker cpp dev-policy priority-1-low
- 0
updated Dec 02, 2019
Estimer K/lambda pour le FineSegmenter: ALP ?

#1651 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control bio-e-value cpp-dynprog cpp-finesegmenter cpp-finesegmenter-D math-stats priority-3-month
- 1
updated Nov 29, 2017
small_example.html ne fonctionne pas sous FF et Chrome

#1652 · created Nov 29, 2016 by Vidjil Team !!-bug dev-tests doc priority-2
- 2
updated Dec 11, 2020
Ne proposer que des presets qui ont du sens

#1654 · created Nov 29, 2016 by Vidjil Team client-axis client-grid priority-2
- 1
updated Dec 11, 2020
extract_basename est Unix-dépendant

#1656 · created Nov 29, 2016 by Vidjil Team old_tracker cpp wont-fix
- 0
updated Nov 30, 2016
Colinéaire génome : test sur tout le génome ?

#1664 · created Nov 29, 2016 by Vidjil Team old_tracker bio-analyze-more bio-control dev-tests priority-3-month
- 1
updated Feb 10, 2021
minifier JS ?

#1665 · created Nov 29, 2016 by Vidjil Team client priority-1-low
- 0
updated Nov 29, 2017
Avoir un message d'erreur explicite si on n'a pas fait "make" dans browser

#1667 · created Nov 29, 2016 by Vidjil Team client client-ergonomy doc
- 3
updated Dec 09, 2016
Adapters Illumina

#1669 · created Nov 29, 2016 by Vidjil Team !!-bug bio-control client-warning
- 1
updated Sep 15, 2017
Séparateurs milliers/décimal

#1676 · created Nov 29, 2016 by Vidjil Team old_tracker client client-i18n priority-1-low wont-fix
- 0
updated Nov 29, 2016
Export fasta: afficher d'une certaine manière les bases enlevées sur la germline

#1680 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion *-too-vague client-export priority-3-month
- 0
updated Nov 29, 2016
Afficher séparément les tubes de PCR différents, même quand ils concernent le même locus

#1684 · created Nov 29, 2016 by Vidjil Team !-hard !-reflexion LIL-Lille bio-control bio-germlines client client-axis feature priority-3-month
- 2
updated Jan 09, 2019
Bug d'affichage quand le focus sur un clone (% en bas à droite) est très long

#1694 · created Nov 29, 2016 by Vidjil Team old_tracker client client-ugly priority-3-month
- 2
updated Nov 21, 2018
Identifiants des germlines dans germlines.js

#1695 · created Nov 29, 2016 by Vidjil Team !-hard !-reflexion bio-germlines bio-species client-ugly dev-policy priority-3-month
- 1
updated Jan 31, 2017
Générer des .fa.gz pour les gros get_reads

#1699 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-1-low
- 0
updated Nov 29, 2016
Statistiques sur le sens de la segmentation de chaque clone

#1700 · created Nov 29, 2016 by Vidjil Team bio-control client-info cpp cpp-export feature priority-2
- 1
updated Nov 29, 2017
Dans la table "config", afficher le nombre de runs lancés avec chaque config

#1701 · created Nov 29, 2016 by Vidjil Team old_tracker client-database priority-2 server-database
- 0
updated Nov 29, 2016
Couleurs : est-ce qu'on met une coloration par défaut ?

#1706 · created Nov 29, 2016 by Vidjil Team client com-first-time-user priority-1-low
- 1
updated Dec 04, 2017
Bug : multi selection dans le barplot alors que la touche maj n'est pas utilisée

#1707 · created Nov 29, 2016 by Vidjil Team old_tracker client
- 1
updated Nov 20, 2018
0914-pap-IGH+.should-vdj.fa

#1708 · created Nov 29, 2016 by Vidjil Team old_tracker priority-1-low
- 0
updated Nov 29, 2016
Envoyer des séquences à Arrest : plus joli

#1710 · created Nov 29, 2016 by Vidjil Team old_tracker client client-export priority-2
- 0
updated Nov 29, 2016
Aucune config sélectionnée par défaut

#1715 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-2 server server-config
- 0
updated Nov 29, 2016
Analyse en profondeur du comportement du DAL web2py

#1719 · created Nov 29, 2016 by Vidjil Team old_tracker priority-1-low server-database server-speed
- 0
updated Jan 25, 2017
Sauvegarde du tri de la liste des patients

#1721 · created Nov 29, 2016 by Vidjil Team old_tracker priority-1-low
- 0
updated Nov 29, 2016
.fastq cassé, ignorer des séquences

#1723 · created Nov 29, 2016 by Vidjil Team client-warning cpp
- 4
updated Oct 11, 2019
Conserver la notification actuelle lors de la suppression d'une notification

#1734 · created Nov 29, 2016 by Vidjil Team old_tracker client-notifications priority-1-low
- 0
updated Nov 09, 2017
Jeu de couleurs visibles par tous (ou presque)

#1739 · created Nov 29, 2016 by Vidjil Team !-reflexion client-accessibility client-design client-ergonomy priority-2 user-request
- 4
updated Nov 07, 2019
Rajouter de la doc pour pré-processing, check qualité...

#1743 · created Nov 29, 2016 by Vidjil Team doc server-pre-process
- 1
updated Aug 27, 2020
Contrôle de la contamination sur un run

#1744 · created Nov 29, 2016 by Vidjil Team LIL-Lille MON-Monza PAN-Necker Paris-Pitié bio-control client feature priority-3-month server-qc-stats user-request
- 22
updated Dec 11, 2020
Charger / Sauver les .analysis dans des vues autres que Patient

#1746 · created Nov 29, 2016 by Vidjil Team old_tracker !-hard !-reflexion BRU-Bruxelles priority-3-month
- 0
updated Nov 29, 2016
Clustering par similarité

#1749 · created Nov 29, 2016 by Vidjil Team old_tracker client
- 0
updated Nov 30, 2016
Collaboration Montréal

#1750 · created Nov 29, 2016 by Vidjil Team old_tracker bio-species priority-2
- 0
updated Jan 24, 2017
Select All / Exporter tous les clones

#1754 · created Nov 29, 2016 by Vidjil Team old_tracker client-ergonomy client-export feature priority-2
- 0
updated Jan 18, 2019
cluster fait disparaître les smaller clones

#1759 · created Nov 29, 2016 by Vidjil Team !!-bug client client-cluster priority-1-low
- 1
updated Jan 18, 2019
Une séquence ambiguë à tort ? -4

#1760 · created Nov 29, 2016 by Vidjil Team old_tracker bio-germlines-pseudo cpp-heuristic priority-1-low
- 0
updated Feb 04, 2017
retrieve and display in a drop-list all .analysis who share at least one sample with the currently diplayed sample_set

#1762 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-3-month server
- 0
updated Nov 29, 2016
Nomenclature originale, PMC2706371

#1764 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 repseq-standardization
- 0
updated Nov 29, 2016
clones : null si pas de clones

#1773 · created Nov 29, 2016 by Vidjil Team !!-bug cpp priority-2 repseq-formats server-fuse
- 1
- 5
updated Feb 03, 2020
Diagramme de Venn et log-log

#1778 · created Nov 29, 2016 by Vidjil Team old_tracker client client-log-log feature priority-2
- 0
updated Mar 21, 2019
Indice/index de clonalité, diversité : par locus ?

#1781 · created Nov 29, 2016 by Vidjil Team bio-control bio-diversity com-vw-vidjil-workshop cpp
- 0
updated Mar 18, 2019
Indice/index de clonalité, diversité, options et clustérisation

#1782 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control bio-diversity cpp cpp-cluster priority-2
- 0
updated Nov 29, 2016
Indice/index de clonalité ou autres valeurs sur le time graph

#1783 · created Nov 29, 2016 by Vidjil Team !-reflexion bio-diversity client feature
- 1
updated Mar 21, 2019
Export ou import VDJtools

#1785 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 repseq-formats
- 0
updated Nov 29, 2016
Server error sur URL mal formée

#1789 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-2 server
- 0
updated Nov 29, 2016
VDDJ et sortie json

#1792 · created Nov 29, 2016 by Vidjil Team old_tracker PAN-Necker cpp-finesegmenter priority-2 repseq-formats
- 0
updated Nov 29, 2016
VDDJ et overlap

#1793 · created Nov 29, 2016 by Vidjil Team old_tracker PAN-Necker cpp-finesegmenter priority-2
- 0
updated Nov 29, 2016
should-vdj-to-tap.py: meilleur diff, détailler l'échec

#1800 · created Nov 29, 2016 by Vidjil Team old_tracker dev-tests feature priority-2
- 0
updated Nov 29, 2016
CD et autres choses utiles pour l'immuno en RNA-Seq

#1801 · created Nov 29, 2016 by Vidjil Team LYON-Sarah bio-analyze-more bio-control bio-germlines bio-germlines-pseudo bio-immuno bio-rnaseq cpp cpp-heuristic feature priority-2
- 8
updated Aug 27, 2018
Tester align / cgi en test fonctionnel/intégration

#1805 · created Nov 29, 2016 by Vidjil Team dev-tests priority-2
- 4
updated Jan 08, 2021
Ne pas afficher "smaller clones" quand il n'y en a pas

#1809 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-2
- 0
updated Nov 29, 2016
Indicateur de progression / tâches en cours pour ce qui est lancé par task.py

#1817 · created Nov 29, 2016 by Vidjil Team cpp-speed server server-ergonomy server-task.py
- 0
updated Feb 28, 2019
Priorités pour les tâches

#1818 · created Nov 29, 2016 by Vidjil Team priority-2 server server-speed server-task.py
- 0
updated Nov 29, 2017
Mieux comprendre IMGT/JunctionAnalysis

#1819 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 repseq-IMGT
- 0
updated Jun 05, 2019
MiXCR : rebaser avant un pull request

#1837 · created Nov 29, 2016 by Vidjil Team doc repseq-mixcr repseq-platform
- 0
updated Aug 19, 2019
MiXCR : compilation, tests

#1838 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 repseq-mixcr repseq-platform
- 0
updated Nov 29, 2016
VidjilFieldExtractor, extract : autres infos, FR1234/CDR123

#1841 · created Nov 29, 2016 by Vidjil Team client-aligner priority-2 repseq-formats repseq-mixcr repseq-platform
- 1
updated May 28, 2020
imseq

#1842 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2 repseq-platform
- 0
updated Nov 29, 2016
Mieux packager les releases algo, /README.md

#1845 · created Nov 29, 2016 by Vidjil Team com-first-time-user cpp priority-1-low
- 1
updated Aug 27, 2020
"upload list" : mettre "uploading icon-spin4" tant qu'il y a des uploads en cours

#1850 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- 0
updated Nov 29, 2016
Color by DBScan

#1860 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client dev-dead-code priority-2
- 0
updated Nov 29, 2016
IMGT4Seg: les 10 séquences suivantes

#1864 · created Nov 29, 2016 by Vidjil Team !-hard priority-2 repseq-IMGT
- 0
updated Apr 16, 2018
Prise en compte de la central région pour la p-valeur : mauvaise idée pour choix du meilleur locus

#1878 · created Nov 29, 2016 by Vidjil Team Algo -- Important !!-bug bio-analyze-more bio-e-value bio-germlines cpp-heuristic
- 3
updated Dec 04, 2020
Nouvelle vue, grid avec tous les locus / résumé

#1887 · created Nov 29, 2016 by Vidjil Team !-reflexion client client-grid client-views feature
- 6
updated Dec 04, 2020
evalues > 1

#1889 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug bio-e-value cpp-heuristic priority-3-month
- 1
updated Sep 16, 2019
Grid / Bar : Ajouter courbes ?

#1890 · created Nov 29, 2016 by Vidjil Team client client-ergonomy client-graph client-grid priority-1-low
- 0
updated Apr 16, 2018
Gadgets : savoir si on les garde

#1895 · created Nov 29, 2016 by Vidjil Team !-reflexion client
- 0
updated Apr 16, 2018
Upload fichier : lorsqu'on rentre un fichier de même nom, peu clair

#1896 · created Nov 29, 2016 by Vidjil Team server-database user-request
- 1
updated Jan 18, 2019
Le bouton back n'est pas toujours intuitif

#1911 · created Nov 29, 2016 by Vidjil Team old_tracker priority-2
- 0
updated Nov 29, 2016
Créer un nouveau clone artificiel / ajouter une séquence (modèle) 0 of 3 tasks completed

#1921 · created Nov 29, 2016 by Vidjil Team Web 2018.01 Aug 27, 2017 LIL-Lille PRA-Prague client client-virtual-clone feature
- 5
updated Jan 10, 2018
Tout ce qui est dans task.py devrait être lancé par un autre utilisateur

#1930 · created Nov 29, 2016 by Vidjil Team old_tracker !-security priority-3-month server server-pre-process server-task.py
- 0
updated Dec 08, 2016
Véracité des causes de non segmentation (et implications du -t ou -2)

#1936 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug bio-CLL bio-trim client-info cpp-heuristic priority-3-month
- 0
updated Dec 06, 2016
"import analysis" s'il n'y a rien de chargé devrait être désactivé (ou erreur)

#1938 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-2
- 0
updated Nov 29, 2016
Cluster par courbes ayant même dynamique temporelle

#1943 · created Nov 29, 2016 by Vidjil Team LIL-Immuno client client-cluster client-graph feature user-request
- 8
updated Jul 09, 2020
Trouver une autre méthode de scheduling, indépendante de web2py

#1950 · created Nov 29, 2016 by Vidjil Team old_tracker !-hard !-reflexion priority-3-month server server-task.py
- 0
updated Nov 29, 2016
Export csv générique sur toute vue grid / bar

#1952 · created Nov 29, 2016 by Vidjil Team client-export feature priority-3-month
- 1
updated Nov 29, 2017
Les D multiples ne sont pas colorés dans les rapports, factoriser colorisation séquence

#1963 · created Nov 29, 2016 by Vidjil Team old_tracker PAR-Debré client-rapport cpp-finesegmenter-D
- 0
updated Nov 23, 2019
e-values .vidjil sont celles du Kmer, pas du Fine

#1964 · created Nov 29, 2016 by Vidjil Team old_tracker bio-e-value cpp cpp-heuristic priority-3-month
- 0
updated Sep 16, 2019
Fichiers avec plus de 2G reads et int overflow

#1968 · created Nov 29, 2016 by Vidjil Team bio-analyze-more cpp priority-2 repseq-formats
- 0
updated Feb 01, 2017
Plusieurs J à la suite : prendre le premier J

#1971 · created Nov 29, 2016 by Vidjil Team PAR-Debré cpp cpp-costs cpp-finesegmenter dev-tests-should-get user-request
- 4
updated Feb 23, 2018
Sortir la séquence consensus complète en donnant un histogramme de la représentativité (à la JalView)

#1972 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion Paris-Pitié cpp-representative feature priority-2
- 0
updated Jun 25, 2018
Le left-container a une largeur qui n'est pas toujours la même

#1981 · created Nov 29, 2016 by Vidjil Team !!-bug client-design client-less-css priority-2
- 1
updated Apr 16, 2018
Affichage des logs du serveur web

#1986 · created Nov 29, 2016 by Vidjil Team old_tracker dev-robust priority-2 server
- 0
updated Nov 29, 2016
Supprimer le calcul de matrice de similarité dans l'algo

#1990 · created Nov 29, 2016 by Vidjil Team old_tracker cpp priority-3-month
- 0
updated May 26, 2020
app/analyze: exposer/documenter une API

#1992 · created Nov 29, 2016 by Vidjil Team app-analyze collaboration doc priority-2 repseq-Nikos repseq-Shugay repseq-formats
- 1
updated Apr 11, 2017
app/analyze: contact pour séquences avec souci

#1994 · created Nov 29, 2016 by Vidjil Team app-analyze com dev-tests-curated-vdj priority-2
- 0
updated Apr 11, 2017
Export Krona pour la visualisation du répertoire

#1995 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion PAN-Necker client-export priority-1-low
- 0
updated Nov 29, 2016
Afficher certaines séquences particulières, même en-dessous du -t

#1996 · created Nov 29, 2016 by Vidjil Team !-reflexion BRI-Bristol bio-analyze-more bio-mrd client feature priority-2 server-fuse
- 4
updated Jun 11, 2020
Le résultat de la segmentation change selon le contexte

#2003 · created Nov 29, 2016 by Vidjil Team Algo -- Important +-working-dead cpp cpp-dynprog cpp-finesegmenter-D cpp-representative
- 10
updated Nov 23, 2019
ECMAScript v5.1 ? Version du DOM ?

#2006 · created Nov 29, 2016 by Vidjil Team Web 2018.01 client dev-build dev-policy dev-tests priority-2
- 13
updated Nov 28, 2019
should-to-tap.sh / should-vdi-to-tap.py : option verbose, -v/-vv ?

#2012 · created Nov 29, 2016 by Vidjil Team old_tracker dev-tests priority-2
- 0
updated Nov 29, 2016
Compresser les fichiers .vidjil et .fused

#2015 · created Nov 29, 2016 by Vidjil Team Web 2021.11 !-important client priority-2 server server-config
- 10
updated Apr 30, 2021
Lorsqu'on affiche les données d'un run, les courbes sont affichées (et séparées) par date

#2017 · created Nov 29, 2016 by Vidjil Team old_tracker LIL-Lille client-ergonomy client-graph priority-2
- 0
updated Nov 29, 2016