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  • vidjilvidjil
  • Issues

  • Open 1,688
  • Closed 1,909
  • All 3,597
New issue
  • Priority Created date Last updated Milestone due date Due date Popularity Label priority Manual
  • Release 2020.05 et/ou déploiement sans release
    #4278 · opened May 01, 2020 by Mathieu Giraud   server-hosting
    • CLOSED
    • 2
    updated May 07, 2020
  • benchmarks : remettre dans l'ordre
    #4282 · opened May 06, 2020 by Mathieu Giraud   cpp-speed priority-1-low
    • CLOSED
    • 4
    • 0
    updated May 20, 2020
  • Vidjil-algo : récupérer SIGINT
    #4286 · opened May 07, 2020 by Mathieu Giraud   Algo 2020.06   cpp priority-1-low
    • CLOSED
    • 2
    updated May 20, 2020
  • Pourquoi multi-0 sur 2020.04 est plus rapide ?
    #4287 · opened May 07, 2020 by Mathieu Giraud   cpp-aho cpp-speed
    • CLOSED
    • 4
    updated May 20, 2020
  • SampleSets: SET_TYPE_*
    #2282 · opened Mar 22, 2017 by Mathieu Giraud   Web 2017.05   !!-bug server server-sample-sets
    • CLOSED
    • 7
    updated May 16, 2017
  • Multi-threader web2py
    #1919 · opened Nov 29, 2016 by Vidjil Team   Web 2017.03   priority-3-month server
    • CLOSED
    • 4
    updated Mar 22, 2017
  • Faire au moins un test avec souris et rat
    #2180 · opened Feb 14, 2017 by Mathieu Giraud   Algo 2017.03   bio-species cpp dev-tests priority-1-low
    • CLOSED
    • 1
    updated Feb 15, 2017
  • Tracer la version de germlines utilisée dans l'algo
    #2155 · opened Feb 01, 2017 by Mathieu Giraud   Algo 2017.03   #-vodooj bio-control cpp repseq-formats
    • CLOSED
    • 1
    • 1
    updated Sep 07, 2018
  • Compare patients lève une IOError
    #1432 · opened Nov 29, 2016 by Vidjil Team   old_tracker !!-bug *-go priority-4-week server server-fuse
    • CLOSED
    • 0
    updated Nov 29, 2016
  • API: erreur si mauvais appel
    #1301 · opened Nov 29, 2016 by Vidjil Team   old_tracker *-go dev-robust priority-3-month server-api
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Le merge semble ne pas fonctionner
    #2014 · opened Nov 29, 2016 by Vidjil Team   old_tracker !!-bug client priority-5-today
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Sauvegarder et utiliser l'id des samples dans les fichiers .analysis
    #2176 · opened Feb 09, 2017 by Thonier Florian   Web 2017.05   !!-bug !-important *-go +-deploy REN-Rennes client-database client-graph priority-4-week repseq-formats
    • CLOSED
    • 18
    updated May 18, 2017
  • API/URL: faire que le modèle soit correctement initialisé si on entre l'url
    #2182 · opened Feb 14, 2017 by Mathieu Giraud   client client-api
    • CLOSED
    • 1
    • 0
    updated Mar 17, 2017
  • Avoir un meilleur moyen de modifier les configurations dans les Docker
    #2469 · opened May 17, 2017 by Ryan Herbert   Web 2017.05   dev-packaging server-docker
    • CLOSED
    • 1
    • 0
    updated May 23, 2017
  • Application des axes dans list.js et segmenter.js
    #2451 · opened May 16, 2017 by Ryan Herbert   Web 2017.05   client client-axis client-axis-columns dev-policy dev-refactor
    • CLOSED
    • 1
    • 7
    updated May 19, 2017
  • Export fasta : meilleurs pourcentages, par système
    #1483 · opened Nov 29, 2016 by Vidjil Team   old_tracker client-export priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Upload de gros fichiers impossible sur vda
    #2149 · opened Feb 01, 2017 by Mikaël Salson   Feb 22, 2017   !!-bug LIL-Lille bio-capture server server-upload
    • CLOSED
    • 17
    updated Feb 14, 2017
  • "in frame only", CDR3
    #1704 · opened Nov 29, 2016 by Vidjil Team   old_tracker
    • CLOSED
    • 1
    updated Dec 06, 2016
  • Erreur si aucun clone présent à l'ouverture d'une analyse.
    #4298 · opened May 26, 2020 by Thonier Florian   !!-bug *-go TOU-Toulouse client client-database
    • CLOSED
    • 1
    • 3
    updated Jun 09, 2020
  • Waiting for server reply / still waiting alors que le .vidjil est chargé
    #4303 · opened May 26, 2020 by Mathieu Giraud   !!-bug client-ergonomy client-speed
    • CLOSED
    • 2
    • 2
    updated Jun 12, 2020
  • annotations: menu patient
    #1826 · opened Nov 29, 2016 by Vidjil Team   old_tracker priority-5-today
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Impossible de se connecter au serveur
    #1390 · opened Nov 29, 2016 by Vidjil Team   old_tracker !!-bug *-go priority-5-today server
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Exporter toutes les infos...
    #889 · opened Nov 29, 2016 by Vidjil Team   old_tracker *-too-vague client client-export priority-1-low sub
    • CLOSED
    • 1
    updated Apr 12, 2017
  • Indicateur de progression au "démarrage" du client, en particulier pour le lien vers la db
    #2081 · opened Dec 27, 2016 by Mathieu Giraud   client client-database client-ergonomy com-first-time-user server-database
    • CLOSED
    • 1
    updated Jan 18, 2017
  • Release / version du browser, js/version.js
    #1424 · opened Nov 29, 2016 by Vidjil Team   old_tracker !-reflexion client priority-4-week
    • CLOSED
    • 0
    updated Mar 14, 2017
  • L'export pdf ne fonctionne plus sur rbx (par exemple, Demo-LIL-L2)
    #1215 · opened Nov 29, 2016 by Vidjil Team   old_tracker !!-bug *-go client-export priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Annulation impossible de l'upload
    #2052 · opened Dec 08, 2016 by Mikaël Salson   client client-database
    • CLOSED
    • 0
    updated Dec 13, 2016
  • Début de V et fin de J : affichage client
    #4308 · opened May 27, 2020 by Mathieu Giraud   client client-aligner
    • CLOSED
    • 1
    • 10
    updated Jun 16, 2020
  • Release algo 2020.06
    #4319 · opened Jun 05, 2020 by Mathieu Giraud   Algo 2020.06   cpp
    • CLOSED
    • 1
    updated Aug 22, 2020
  • Dock et URL
    #4321 · opened Jun 05, 2020 by Mathieu Giraud   !-important server-docker
    • CLOSED
    • 2
    updated Jan 04, 2021
  • Supprimer seg_stat ?
    #4334 · opened Jun 11, 2020 by Mathieu Giraud   Algo 2020.06   cpp-export dev-dead-code
    • CLOSED
    • 1
    • 3
    updated Jul 28, 2020
  • Optimisation du chargement des distributions
    #4347 · opened Jun 15, 2020 by Thonier Florian   client client-speed client-virtual-clone
    • CLOSED
    • 2
    • 8
    updated Jul 28, 2020
  • URL courte : /b au lieu de /browser
    #4357 · opened Jun 18, 2020 by Mathieu Giraud   *-go client-api
    • CLOSED
    • 2
    • 2
    updated Dec 02, 2020
  • URL: problème si l'on recharge une page en local
    #4359 · opened Jun 18, 2020 by Thonier Florian   !!-bug priority-1-low server server-url server-uwsgi
    • CLOSED
    • 2
    • 3
    updated Dec 02, 2020
  • Documenter `stock_order`
    #4364 · opened Jun 19, 2020 by Mikaël Salson   client-analysis doc repseq-formats
    • CLOSED
    • 1
    • 0
    updated Jul 23, 2020
  • Taille des clones de distribution dans le grid V/J // Cacher les clones non intéressants
    #4374 · opened Jun 23, 2020 by Mathieu Giraud   !!-bug client-grid client-virtual-clone
    • CLOSED
    • 3
    • 3
    updated Jul 22, 2020
  • Pouvoir cacher les clones de distribution
    #4375 · opened Jun 23, 2020 by Mikaël Salson   LIL-Immuno client client-filter client-virtual-clone
    • CLOSED
    • 1
    • 0
    updated Jul 28, 2020
  • Certaines analyses on des samples en double dans le champs order
    #4381 · opened Jun 24, 2020 by Thonier Florian   !!-bug client client-analysis
    • CLOSED
    • 1
    • 0
    updated Jul 23, 2020
  • Suppression des patients
    #4384 · opened Jun 26, 2020 by Aurélie CAILLAULT-VENET
    • CLOSED (MOVED)
    • 0
    updated Aug 25, 2020
  • Ne pas produire les fichiers clone.fa
    #4386 · opened Jun 29, 2020 by Mikaël Salson   Algo 2020.08   Aug 6, 2020   !-easy *-go cpp cpp-export cpp-options server-disk
    • CLOSED
    • 1
    • 12
    updated Jul 28, 2020
  • Ne plus produire le `.vdj.fa`, sauf si nouvelle option
    #4387 · opened Jun 29, 2020 by Mikaël Salson   Algo 2020.08   !-easy *-go cpp cpp-export cpp-options server-disk
    • CLOSED
    • 1
    • 5
    updated Jul 30, 2020
  • Supprimer le .vidjil après l'avoir inséré en base de données
    #4388 · opened Jun 29, 2020 by Mikaël Salson   !-easy !-reflexion server server-disk server-task.py
    • CLOSED
    • 1
    • 7
    updated Sep 30, 2020
  • loadAnalysis; erreur si l'ordre des clones diffère de l'ordre du top
    #4394 · opened Jul 02, 2020 by Thonier Florian   !!-bug client client-analysis
    • CLOSED
    • 1
    • 0
    updated Jul 09, 2020
  • Affichage limité à 16 sample dans la vue d'un run
    #2269 · opened Mar 20, 2017 by Thonier Florian   Web 2017.03   server-fuse
    • CLOSED
    • 4
    updated Mar 22, 2017
  • Le soulignement des features ne fonctionne plus dans le segmenteur
    #2117 · opened Jan 19, 2017 by Mikaël Salson   !!-bug client client-aligner
    • CLOSED
    • 3
    updated Jan 23, 2017
  • Des tâches restent en STOPPED, pas toutes
    #2053 · opened Dec 08, 2016 by Mikaël Salson   server server-pre-process server-task.py
    • CLOSED
    • 4
    updated Feb 02, 2017
  • Flash message... en couleur :)
    #875 · opened Nov 29, 2016 by Vidjil Team   old_tracker client priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Sélection par ligne/Y : désactiver quand bar plot
    #1534 · opened Nov 29, 2016 by Vidjil Team   old_tracker *-go client-grid priority-2
    • CLOSED
    • 0
    updated Nov 29, 2016
  • P-value / E-value du segmenter (nb de k-mers)
    #1490 · opened Nov 29, 2016 by Vidjil Team   old_tracker bio-control bio-e-value cpp-heuristic priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Aho-Corasick: construction, implémentation
    #1366 · opened Nov 29, 2016 by Vidjil Team   old_tracker *-go cpp cpp-aho priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Indication onlyV trompeuse sur anayse de capture
    #2107 · opened Jan 16, 2017 by Thonier Florian   Algo 2017.03   bio-e-value cpp cpp-heuristic
    • CLOSED
    • 5
    updated Mar 17, 2017
  • Docker: fournir un bon moyen de changer certains mots de passe
    #2100 · opened Jan 12, 2017 by Ryan Herbert   !-reflexion server-docker
    • CLOSED
    • 3
    updated Oct 25, 2017
  • save analysis cassé
    #1846 · opened Nov 29, 2016 by Vidjil Team   old_tracker priority-5-today
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Impossible de « décacher » le menu de gauche
    #1289 · opened Nov 29, 2016 by Vidjil Team   old_tracker !!-bug *-go client-cloneList priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Serveur auquel faire référence dans les fichiers Javascript
    #2094 · opened Jan 09, 2017 by Mikaël Salson   server-config
    • CLOSED
    • 2
    updated Jan 12, 2017
  • Inversion des axes numeriques
    #4396 · opened Jul 06, 2020 by Thonier Florian   !!-bug !-easy LIL-Immuno client client-axis client-grid user-request
    • CLOSED
    • 2
    • 2
    updated Jul 28, 2020
  • Problème d'update de la vue colorMethod dans la vue info
    #4397 · opened Jul 06, 2020 by Thonier Florian   !!-bug !-easy client client-update
    • CLOSED
    • 1
    • 1
    updated Jul 24, 2020
  • Timeline, respecter les distances entre les différents timepoints
    #4405 · opened Jul 10, 2020 by Thonier Florian   client client-graph feature
    • CLOSED
    • 2
    updated Jul 10, 2020
  • Avec un problème d'ordre les données ne s'affichent pas correctement
    #4408 · opened Jul 20, 2020 by Mikaël Salson   !!-bug !-important *-go client dev-robust
    • CLOSED
    • 1
    • 0
    updated Jul 24, 2020
  • La légende des couleurs ne se met pas à jour
    #4410 · opened Jul 22, 2020 by Mikaël Salson   !!-bug *-go client client-color-by client-update
    • CLOSED
    • 0
    updated Jul 22, 2020
  • Erreur Javascript `isActive` lors de la mise à jour d'un clone dans le scatterplot chez plusieurs utilisateurs
    #4413 · opened Jul 22, 2020 by Mikaël Salson   !!-bug client client-grid client-update
    • CLOSED
    • 1
    • 0
    updated Jul 31, 2020
  • URL : problème sur dev
    #4415 · opened Jul 23, 2020 by Mikaël Salson   !!-bug server server-url
    • CLOSED
    • 3
    updated Jul 23, 2020
  • Avoir un Docker client installable   0 of 3 tasks completed
    #4417 · opened Jul 28, 2020 by Mathieu Giraud   client server-docker
    • CLOSED
    • 1
    • 2
    updated Dec 02, 2020
  • Afficher les index d'overlap
    #4422 · opened Jul 28, 2020 by Mathieu Giraud   app-stats client-views
    • CLOSED
    • 1
    • 4
    updated Sep 15, 2020
  • Regrouper TRD et TRD+, ou les comptabiliser ensemble ?
    #1415 · opened Nov 29, 2016 by Vidjil Team   old_tracker !-reflexion bio-control client client-export priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • "Color by tag" ne fonctionne pas après un autre "Color by" dans la liste des clones
    #2029 · opened Nov 29, 2016 by Vidjil Team   old_tracker !!-bug client priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • getLabelText, un test cassé
    #2419 · opened May 10, 2017 by Mathieu Giraud   client-axis
    • CLOSED
    • 2
    updated May 11, 2017
  • ... sauf celles qui sont déjà mises ailleurs ? (nom/prénom/birth/id)
    #890 · opened Nov 29, 2016 by Vidjil Team   old_tracker *-too-vague client client-export priority-1-low sub
    • CLOSED
    • 1
    updated Apr 12, 2017
  • Transformer hasSeg pour prendre en compte un ensemble de champs : hasSeg( ['5', '3'] )
    #2085 · opened Dec 27, 2016 by Mathieu Giraud   *-go client
    • CLOSED
    • 3
    updated Jan 04, 2017
  • igBlast ne fonctionne plus
    #2004 · opened Nov 29, 2016 by Vidjil Team   old_tracker *-too-vague priority-4-week
    • CLOSED
    • 0
    updated Nov 29, 2016
  • L'alignement multiple ne se fait pas nécessairement par rapport à la première séquence
    #2018 · opened Nov 29, 2016 by Vidjil Team   old_tracker !!-bug LIL-Lille client priority-3-month server-cgi
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Longueur des reads d'un clone (distribution des longueurs par fenêtre) : Stats/BinReads
    #872 · opened Nov 29, 2016 by Vidjil Team   old_tracker bio-control client cpp cpp-heuristic feature priority-3-month
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Animations superflues lors de la normalisation
    #1293 · opened Nov 29, 2016 by Vidjil Team   old_tracker *-go client-graph client-normalization client-ugly priority-3-month
    • CLOSED
    • 0
    updated Apr 03, 2017
  • Faire des tests pour les sélections multiples
    #2093 · opened Jan 09, 2017 by Mathieu Giraud   client client-grid dev-tests
    • CLOSED
    • 8
    updated May 11, 2017
  • Les tests IgBlast ne fonctionnent plus
    #4426 · opened Jul 28, 2020 by Thonier Florian   !!-bug dev-tests dev-tests-watir
    • CLOSED
    • 3
    updated Jul 31, 2020
  • URL : les clones sélectionnés ne sont plus conservés
    #4428 · opened Jul 28, 2020 by Mikaël Salson   !!-bug client server-url
    • CLOSED
    • 4
    updated Jan 04, 2021
  • Certaines URL ne fonctionnent plus
    #4429 · opened Jul 28, 2020 by Mikaël Salson   !!-bug client server-url
    • CLOSED
    • 2
    • 4
    updated Dec 02, 2020
  • URL : faire un custom après avoir consulté des résultats ne donne pas la bonne URL
    #4430 · opened Jul 28, 2020 by Mikaël Salson   !!-bug client server-url
    • CLOSED
    • 2
    • 3
    updated Dec 02, 2020
  • Config nginx : disparition de la section sur les CGI
    #4431 · opened Jul 29, 2020 by Mikaël Salson   server server-admin server-cgi server-docker
    • CLOSED
    • 1
    • 3
    updated Jan 04, 2021
  • URL: chaîne de réécriture visible
    #4432 · opened Jul 29, 2020 by Mathieu Giraud   priority-1-low server-url
    • CLOSED
    • 2
    • 1
    updated Dec 02, 2020
  • URL: "browser" ne devrait jamais arriver spontanément
    #4433 · opened Jul 29, 2020 by Mathieu Giraud   server-url
    • CLOSED
    • 2
    • 0
    updated Dec 02, 2020
  • Certbot : documenter ce qui est fait sur vdb
    #4434 · opened Jul 29, 2020 by Mikaël Salson   doc server-docker
    • CLOSED
    • 1
    updated Dec 24, 2020
  • Versionner docker-backup
    #4435 · opened Jul 29, 2020 by Mathieu Giraud   server-backup server-docker
    • CLOSED
    • 0
    updated Jul 29, 2020
  • nouvelles URL, erreur de chargement
    #4443 · opened Jul 30, 2020 by Thonier Florian   !!-bug client server-url
    • CLOSED
    • 1
    • 2
    updated Jul 31, 2020
  • js: pouvoir switcher le segmenter en mode "AA", où *uniquement les CDR3* des séquences sont traduits en AA, 1 toutes les trois lettres. Par exemple lorsqu'on clique sur les bornes Cys / Phe/Trp
    #957 · opened Nov 29, 2016 by Vidjil Team   old_tracker *-go bio-AA client client-aligner feature priority-5-today sub
    • CLOSED
    • 0
    updated Nov 29, 2016
  • segmenteur, gènes VDJ : quels objets créer ?
    #2357 · opened Apr 11, 2017 by Mathieu Giraud   !-reflexion client client-aligner dev-refactor
    • CLOSED
    • 10
    updated May 15, 2017
  • Diversity measures : Ds vaut 42 sur Demo L4
    #1795 · opened Nov 29, 2016 by Vidjil Team   old_tracker !!-bug priority-5-today
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Release algo 2020.08
    #4457 · opened Aug 21, 2020 by Mathieu Giraud   Algo 2020.08   cpp
    • CLOSED
    • 0
    updated Aug 22, 2020
  • Faire remonter du code quality pour l'algo
    #4464 · opened Aug 27, 2020 by Mathieu Giraud   cpp dev-ci dev-code-quality
    • CLOSED
    • 0
    updated Aug 27, 2020
  • Docker, segmenter page et nouvelles urls
    #4465 · opened Aug 28, 2020 by Mathieu Giraud   server-docker user-request
    • CLOSED
    • 0
    updated Aug 28, 2020
  • interesting substrings: permettre d'avoir une (ou une liste de) chaîne(s) intéressantes qui ne seront pas supprimées
    #1004 · opened Nov 29, 2016 by Vidjil Team   old_tracker priority-1-low server-fuse
    • CLOSED
    • 0
    updated Nov 29, 2016
  • Changer les boutons info/edit de place
    #1075 · opened Nov 29, 2016 by Vidjil Team   old_tracker client-ergonomy priority-1-low
    • CLOSED
    • 0
    updated Nov 29, 2016
  • GermlineWithoutIndex
    #1184 · opened Nov 29, 2016 by Vidjil Team   old_tracker bio-germlines cpp priority-2
    • CLOSED
    • 0
    updated Nov 29, 2016
  • -w all, pour une autre configuration 'clonality' très stricte, sur toute la séquence
    #1642 · opened Nov 29, 2016 by Vidjil Team   Algo 2017.03   PAN-Necker Paris-Pitié bio-CLL cpp cpp-options feature priority-2
    • CLOSED
    • 4
    updated Apr 15, 2020
  • `-y all`: on devrait avoir les séquences consensus dans `.vdj.fa`
    #2239 · opened Mar 09, 2017 by Mathieu Giraud   Algo 2017.03   !!-bug +-deploy Paris-Pitié cpp repseq-formats
    • CLOSED
    • 2
    updated Mar 29, 2017
  • Cachez ce clone que je ne saurais voir
    #2227 · opened Mar 08, 2017 by Mathieu Giraud   Web 2017.03   +-deploy client client-filter feature
    • CLOSED
    • 3
    updated Mar 22, 2017
  • MiXCR : supprimer les fichiers align.vdjca
    #1928 · opened Nov 29, 2016 by Vidjil Team   old_tracker priority-4-week repseq-mixcr server
    • CLOSED
    • 0
    updated Nov 29, 2016
  • compléter germlines.data
    #1310 · opened Nov 29, 2016 by Vidjil Team   old_tracker LIL-Lille bio-germlines dev-tests-notable priority-3-month sub
    • CLOSED
    • 0
    updated Nov 29, 2016
  • EC-NGS in Lille, April 2018
    #2333 · opened Apr 05, 2017 by Mathieu Giraud   com ec-ngs
    • CLOSED (MOVED)
    • 0
    updated Apr 05, 2017
  • Seuil provisoire pour les D, e-valeur
    #2230 · opened Mar 08, 2017 by Mathieu Giraud   Algo 2017.03   bio-e-value cpp cpp-finesegmenter cpp-finesegmenter-D priority-4-week wont-fix
    • CLOSED
    • 3
    updated Mar 14, 2017
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