Issues · vidjil / vidjil

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Dockeriser les tests algo sur divers compilateurs

#4203 · created Feb 28, 2020 by Mikaël Salson cpp dev-ci dev-robust server-docker
- CLOSED
- 1
- 1
updated Mar 10, 2020
FLASH : résultats non accessibles

#4205 · created Mar 02, 2020 by Mikaël Salson !!-bug *-go server server-pre-process
- CLOSED
- 15
updated Jun 25, 2020
Des clics répétés permettent de charger de multiple fois les mêmes données

#4206 · created Mar 02, 2020 by Thonier Florian !!-bug client client-database server server-database server-upload
- CLOSED
- 2
- 0
updated Apr 22, 2020
Documentation docker; dev en local

#4210 · created Mar 06, 2020 by Thonier Florian Mar 13, 2020 doc server-docker
- CLOSED
- 1
- 0
updated Oct 16, 2020
getHTMLinfo : adapter pour clones de distributions, representative sequence

#4211 · created Mar 09, 2020 by Mathieu Giraud *-go client-virtual-clone
- CLOSED
- 1
- 2
updated Mar 18, 2020
Le top de fuse n'est pas bon

#4213 · created Mar 10, 2020 by Thonier Florian !!-bug server-fuse
- CLOSED
- 1
- 0
updated Mar 16, 2020
Erreurs sur la segmenter page avec feature-c/axis-rework

#4217 · created Mar 11, 2020 by Mikaël Salson !!-bug dev-ci dev-tests-watir
- CLOSED
- 0
updated Sep 29, 2020
Avoir un classement par groupe des config proposées

#4219 · created Mar 12, 2020 by Thonier Florian Déploiement 2020.06 client feature server server-config
- CLOSED
- 1
- 1
updated Apr 07, 2020
Les tests unitaires serveur peuvent échouer avec un nom de branche trop long

#4220 · created Mar 12, 2020 by Mikaël Salson dev-ci dev-tests server
- CLOSED
- 2
- 0
updated Jul 28, 2020
Indication sur le graphe quand on affiche uniquement les clones d'un sample

#4221 · created Mar 18, 2020 by Mathieu Giraud Déploiement 2020.06 bikeshedding client-color-by client-graph
- CLOSED
- 1
- 7
updated Mar 25, 2020
Verrou sort: quand on change de point, -

#4222 · created Mar 18, 2020 by Mathieu Giraud Déploiement 2020.06 bikeshedding client-cloneList
- CLOSED
- 1
- 0
updated Mar 24, 2020
Affectations manquantes avec l'option `-1`

#4225 · created Mar 23, 2020 by Mikaël Salson !!-bug *-go cpp cpp-aho cpp-heuristic
- CLOSED
- 1
- 2
updated Mar 25, 2020
Il n'est plus possible d'ajouter plusieurs samples d'un coup

#4229 · created Mar 30, 2020 by Thonier Florian !!-bug client server server-sample-sets
- CLOSED
- 2
- 13
updated Apr 09, 2020
Il manque de nombreuses informations sur la page d'un sample set sur la branche dev

#4232 · created Apr 03, 2020 by Mikaël Salson !!-bug #-crisis-prevention priority-4-week server
- CLOSED
- 1
- 4
updated Apr 07, 2020
Documenter les distributions + export all clones

#4237 · created Apr 07, 2020 by Mathieu Giraud Déploiement 2020.06 Jun 28, 2020 *-go LIL-Lille doc user-request
- CLOSED
- 1
- 7
updated Feb 03, 2021
Documenter FLASH

#4238 · created Apr 07, 2020 by Mathieu Giraud Déploiement 2020.06 *-go doc server-pre-process
- CLOSED
- 1
- 2
updated Jul 23, 2020
impossible de lancer une analyse si le preprocess est en attente

#4239 · created Apr 08, 2020 by Thonier Florian server
- CLOSED
- 1
- 1
updated Apr 09, 2020
Pour les admins, trier 'analysis configs' par classification puis par ordre alphabétique

#4240 · created Apr 08, 2020 by Mathieu Giraud *-go priority-1-low server-admin server-config
- CLOSED
- 1
- 0
updated Apr 23, 2020
Trier les configs à l'intérieur de chaque classification par ordre alphabétique

#4241 · created Apr 08, 2020 by Mathieu Giraud *-go priority-1-low server-config
- CLOSED
- 1
- 1
updated Apr 23, 2020
Le compare samples ne fonctionne pas sur app : connection refused

#4242 · created Apr 10, 2020 by Mikaël Salson !!-bug *-go priority-4-week server server-compare-samples
- CLOSED
- 1
- 3
updated Apr 10, 2020
Comment accéder aux environnements de review server sur une nouvelle MR ?

#4249 · created Apr 16, 2020 by Mathieu Giraud dev-ci doc
- CLOSED
- 1
- 4
updated Apr 28, 2020
Impossible de relancer une analyse effectuée

#4252 · created Apr 21, 2020 by Anne de Septenville !!-bug Paris-Pitié server server-task.py user-request
- CLOSED
- 1
- 2
updated Apr 21, 2020
vidjil-algo : pouvoir sortir un .vidjil.gz

#4253 · created Apr 21, 2020 by Mathieu Giraud *-go cpp-export cpp-options
- CLOSED
- 1
- 0
updated Jul 28, 2020
fuse.py : pouvoir lire des .vidjil.gz et des .tsv.gz

#4254 · created Apr 21, 2020 by Mathieu Giraud *-go server-fuse
- CLOSED
- 1
- 0
updated Jul 28, 2020
Upgrade issue with classification

#4261 · created Apr 23, 2020 by Mikaël Salson Boldrini-Brasil server server-database user-request
- CLOSED
- 7
updated Jun 25, 2020
Vidjil-algo : Double free or corruption

#4263 · created Apr 27, 2020 by Mikaël Salson !!-bug cpp cpp-representative
- CLOSED
- 1
- 5
updated May 07, 2020
Erreur Javascript dans computeBarTab

#4265 · created Apr 27, 2020 by Mikaël Salson !!-bug client
- CLOSED
- 7
updated Jun 12, 2020
Release 2020.04

#4268 · created Apr 28, 2020 by Mathieu Giraud +-deploy cpp
- CLOSED
- 1
updated Apr 30, 2020
--gz devrait aussi sortir des .tsv.gz

#4269 · created Apr 28, 2020 by Mathieu Giraud cpp-options
- CLOSED
- 1
updated Apr 28, 2020
--gz devrait aussi compresser .vdj.fa

#4270 · created Apr 28, 2020 by Mathieu Giraud cpp-options
- CLOSED
- 1
- 0
updated Apr 28, 2020
Vidjil-algo : double free or corruption

#4272 · created Apr 30, 2020 by Mikaël Salson !!-bug cpp priority-4-week
- CLOSED
- 2
- 0
updated May 07, 2020
Fiabilité de benchmark sur docker / différentes architectures

#4275 · created May 01, 2020 by Mathieu Giraud Algo 2020.06 !-reflexion cpp-speed server-docker
- CLOSED
- 4
- 18
updated Jan 26, 2021
Release 2020.05 et/ou déploiement sans release

#4278 · created May 01, 2020 by Mathieu Giraud server-hosting
- CLOSED
- 2
updated May 07, 2020
benchmarks : remettre dans l'ordre

#4282 · created May 06, 2020 by Mathieu Giraud cpp-speed priority-1-low
- CLOSED
- 4
- 0
updated May 20, 2020
Vidjil-algo : récupérer SIGINT

#4286 · created May 07, 2020 by Mathieu Giraud Algo 2020.06 cpp priority-1-low
- CLOSED
- 2
updated May 20, 2020
Pourquoi multi-0 sur 2020.04 est plus rapide ?

#4287 · created May 07, 2020 by Mathieu Giraud cpp-aho cpp-speed
- CLOSED
- 4
updated May 20, 2020
SampleSets: SET_TYPE_*

#2282 · created Mar 22, 2017 by Mathieu Giraud Web 2017.05 !!-bug server server-sample-sets
- CLOSED
- 7
updated May 16, 2017
Multi-threader web2py

#1919 · created Nov 29, 2016 by Vidjil Team Web 2017.03 priority-3-month server
- CLOSED
- 4
updated Mar 22, 2017
Faire au moins un test avec souris et rat

#2180 · created Feb 14, 2017 by Mathieu Giraud Algo 2017.03 bio-species cpp dev-tests priority-1-low
- CLOSED
- 1
updated Feb 15, 2017
Tracer la version de germlines utilisée dans l'algo

#2155 · created Feb 01, 2017 by Mathieu Giraud Algo 2017.03 #-vodooj bio-control cpp repseq-formats
- CLOSED
- 1
- 1
updated Sep 07, 2018
Compare patients lève une IOError

#1432 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server server-fuse
- CLOSED
- 0
updated Nov 29, 2016
API: erreur si mauvais appel

#1301 · created Nov 29, 2016 by Vidjil Team old_tracker *-go dev-robust priority-3-month server-api
- CLOSED
- 0
updated Nov 29, 2016
Le merge semble ne pas fonctionner

#2014 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug client priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Sauvegarder et utiliser l'id des samples dans les fichiers .analysis

#2176 · created Feb 09, 2017 by Thonier Florian Web 2017.05 !!-bug !-important *-go +-deploy REN-Rennes client-database client-graph priority-4-week repseq-formats
- CLOSED
- 18
updated May 18, 2017
API/URL: faire que le modèle soit correctement initialisé si on entre l'url

#2182 · created Feb 14, 2017 by Mathieu Giraud client client-api
- CLOSED
- 1
- 0
updated Mar 17, 2017
Avoir un meilleur moyen de modifier les configurations dans les Docker

#2469 · created May 17, 2017 by Ryan Herbert Web 2017.05 dev-packaging server-docker
- CLOSED
- 1
- 0
updated May 23, 2017
Application des axes dans list.js et segmenter.js

#2451 · created May 16, 2017 by Ryan Herbert Web 2017.05 client client-axis client-axis-columns dev-policy dev-refactor
- CLOSED
- 1
- 7
updated May 19, 2017
Export fasta : meilleurs pourcentages, par système

#1483 · created Nov 29, 2016 by Vidjil Team old_tracker client-export priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Upload de gros fichiers impossible sur vda

#2149 · created Feb 01, 2017 by Mikaël Salson Feb 22, 2017 !!-bug LIL-Lille bio-capture server server-upload
- CLOSED
- 17
updated Feb 14, 2017
"in frame only", CDR3

#1704 · created Nov 29, 2016 by Vidjil Team old_tracker
- CLOSED
- 1
updated Dec 06, 2016
Erreur si aucun clone présent à l'ouverture d'une analyse.

#4298 · created May 26, 2020 by Thonier Florian !!-bug *-go TOU-Toulouse client client-database
- CLOSED
- 1
- 3
updated Jun 09, 2020
Waiting for server reply / still waiting alors que le .vidjil est chargé

#4303 · created May 26, 2020 by Mathieu Giraud !!-bug client-ergonomy client-speed
- CLOSED
- 2
- 2
updated Jun 12, 2020
annotations: menu patient

#1826 · created Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Impossible de se connecter au serveur

#1390 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-5-today server
- CLOSED
- 0
updated Nov 29, 2016
Exporter toutes les infos...

#889 · created Nov 29, 2016 by Vidjil Team old_tracker *-too-vague client client-export priority-1-low sub
- CLOSED
- 1
updated Apr 12, 2017
Indicateur de progression au "démarrage" du client, en particulier pour le lien vers la db

#2081 · created Dec 27, 2016 by Mathieu Giraud client client-database client-ergonomy com-first-time-user server-database
- CLOSED
- 1
updated Jan 18, 2017
Release / version du browser, js/version.js

#1424 · created Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client priority-4-week
- CLOSED
- 0
updated Mar 14, 2017
L'export pdf ne fonctionne plus sur rbx (par exemple, Demo-LIL-L2)

#1215 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-export priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Annulation impossible de l'upload

#2052 · created Dec 08, 2016 by Mikaël Salson client client-database
- CLOSED
- 0
updated Dec 13, 2016
Début de V et fin de J : affichage client

#4308 · created May 27, 2020 by Mathieu Giraud client client-aligner
- CLOSED
- 1
- 10
updated Jun 16, 2020
Release algo 2020.06

#4319 · created Jun 05, 2020 by Mathieu Giraud Algo 2020.06 cpp
- CLOSED
- 1
updated Aug 22, 2020
Dock et URL

#4321 · created Jun 05, 2020 by Mathieu Giraud !-important server-docker
- CLOSED
- 2
updated Jan 04, 2021
Supprimer seg_stat ?

#4334 · created Jun 11, 2020 by Mathieu Giraud Algo 2020.06 cpp-export dev-dead-code
- CLOSED
- 1
- 3
updated Jul 28, 2020
Chiffres significatifs : average_read_length, e-value

#4338 · created Jun 11, 2020 by Mathieu Giraud bikeshedding bio-e-value cpp-export priority-1-low
- CLOSED
- 1
- 1
updated Mar 31, 2021
http://www.vidjil.org/releases/vidjil-algo-latest.tar.gz

#4346 · created Jun 15, 2020 by Mathieu Giraud Algo 2021.06 *-go dev-cd
- CLOSED
- 1
- 9
updated Apr 28, 2021
Optimisation du chargement des distributions

#4347 · created Jun 15, 2020 by Thonier Florian client client-speed client-virtual-clone
- CLOSED
- 2
- 8
updated Jul 28, 2020
URL courte : /b au lieu de /browser

#4357 · created Jun 18, 2020 by Mathieu Giraud *-go client-api
- CLOSED
- 2
- 2
updated Dec 02, 2020
URL: problème si l'on recharge une page en local

#4359 · created Jun 18, 2020 by Thonier Florian !!-bug priority-1-low server server-url server-uwsgi
- CLOSED
- 2
- 3
updated Dec 02, 2020
Pouvoir choisir plusieurs fichiers de reads pour un sample avec un disque réseau

#4361 · created Jun 19, 2020 by Mikaël Salson LIL-Lille server server-disk server-pre-process server-upload
- CLOSED
- 0
updated Apr 23, 2021
Documenter `stock_order`

#4364 · created Jun 19, 2020 by Mikaël Salson client-analysis doc repseq-formats
- CLOSED
- 1
- 0
updated Jul 23, 2020
Label dans les graph; avoir des tooltips

#4370 · created Jun 22, 2020 by Thonier Florian client client-ergonomy client-graph feature
- CLOSED
- 1
- 0
updated Mar 30, 2021
Taille des clones de distribution dans le grid V/J // Cacher les clones non intéressants

#4374 · created Jun 23, 2020 by Mathieu Giraud !!-bug client-grid client-virtual-clone
- CLOSED
- 3
- 3
updated Jul 22, 2020
Pouvoir cacher les clones de distribution

#4375 · created Jun 23, 2020 by Mikaël Salson LIL-Immuno client client-filter client-virtual-clone
- CLOSED
- 1
- 0
updated Jul 28, 2020
Certaines analyses on des samples en double dans le champs order

#4381 · created Jun 24, 2020 by Thonier Florian !!-bug client client-analysis
- CLOSED
- 1
- 0
updated Jul 23, 2020
Suppression des patients

#4384 · created Jun 26, 2020 by Aurélie CAILLAULT-VENET
- CLOSED (MOVED)
- 0
updated Aug 25, 2020
Ne pas produire les fichiers clone.fa

#4386 · created Jun 29, 2020 by Mikaël Salson Algo 2020.08 Aug 6, 2020 !-easy *-go cpp cpp-export cpp-options server-disk
- CLOSED
- 1
- 12
updated Jul 28, 2020
Ne plus produire le `.vdj.fa`, sauf si nouvelle option

#4387 · created Jun 29, 2020 by Mikaël Salson Algo 2020.08 !-easy *-go cpp cpp-export cpp-options server-disk
- CLOSED
- 1
- 5
updated Jul 30, 2020
Supprimer le .vidjil après l'avoir inséré en base de données

#4388 · created Jun 29, 2020 by Mikaël Salson !-easy !-reflexion server server-disk server-task.py
- CLOSED
- 1
- 7
updated Sep 30, 2020
loadAnalysis; erreur si l'ordre des clones diffère de l'ordre du top

#4394 · created Jul 02, 2020 by Thonier Florian !!-bug client client-analysis
- CLOSED
- 1
- 0
updated Jul 09, 2020
Affichage limité à 16 sample dans la vue d'un run

#2269 · created Mar 20, 2017 by Thonier Florian Web 2017.03 server-fuse
- CLOSED
- 4
updated Mar 22, 2017
Le soulignement des features ne fonctionne plus dans le segmenteur

#2117 · created Jan 19, 2017 by Mikaël Salson !!-bug client client-aligner
- CLOSED
- 3
updated Jan 23, 2017
Des tâches restent en STOPPED, pas toutes

#2053 · created Dec 08, 2016 by Mikaël Salson server server-pre-process server-task.py
- CLOSED
- 4
updated Feb 02, 2017
Flash message... en couleur :)

#875 · created Nov 29, 2016 by Vidjil Team old_tracker client priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Sélection par ligne/Y : désactiver quand bar plot

#1534 · created Nov 29, 2016 by Vidjil Team old_tracker *-go client-grid priority-2
- CLOSED
- 0
updated Nov 29, 2016
P-value / E-value du segmenter (nb de k-mers)

#1490 · created Nov 29, 2016 by Vidjil Team old_tracker bio-control bio-e-value cpp-heuristic priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Aho-Corasick: construction, implémentation

#1366 · created Nov 29, 2016 by Vidjil Team old_tracker *-go cpp cpp-aho priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Indication onlyV trompeuse sur anayse de capture

#2107 · created Jan 16, 2017 by Thonier Florian Algo 2017.03 bio-e-value cpp cpp-heuristic
- CLOSED
- 5
updated Mar 22, 2021
Docker: fournir un bon moyen de changer certains mots de passe

#2100 · created Jan 12, 2017 by Ryan Herbert !-reflexion server-docker
- CLOSED
- 3
updated Oct 25, 2017
save analysis cassé

#1846 · created Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Impossible de « décacher » le menu de gauche

#1289 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-cloneList priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Serveur auquel faire référence dans les fichiers Javascript

#2094 · created Jan 09, 2017 by Mikaël Salson server-config
- CLOSED
- 2
updated Jan 12, 2017
Inversion des axes numeriques

#4396 · created Jul 06, 2020 by Thonier Florian !!-bug !-easy LIL-Immuno client client-axis client-grid user-request
- CLOSED
- 2
- 2
updated Jul 28, 2020
Problème d'update de la vue colorMethod dans la vue info

#4397 · created Jul 06, 2020 by Thonier Florian !!-bug !-easy client client-update
- CLOSED
- 1
- 1
updated Jul 24, 2020
Timeline, respecter les distances entre les différents timepoints

#4405 · created Jul 10, 2020 by Thonier Florian client client-graph feature
- CLOSED
- 2
updated Jul 10, 2020
Avec un problème d'ordre les données ne s'affichent pas correctement

#4408 · created Jul 20, 2020 by Mikaël Salson !!-bug !-important *-go client dev-robust
- CLOSED
- 1
- 0
updated Jul 24, 2020
La légende des couleurs ne se met pas à jour

#4410 · created Jul 22, 2020 by Mikaël Salson !!-bug *-go client client-color-by client-update
- CLOSED
- 0
updated Jul 22, 2020
Erreur Javascript `isActive` lors de la mise à jour d'un clone dans le scatterplot chez plusieurs utilisateurs

#4413 · created Jul 22, 2020 by Mikaël Salson !!-bug client client-grid client-update
- CLOSED
- 1
- 0
updated Jul 31, 2020
URL : problème sur dev

#4415 · created Jul 23, 2020 by Mikaël Salson !!-bug server server-url
- CLOSED
- 3
updated Jul 23, 2020
Avoir un Docker client installable 0 of 3 tasks completed

#4417 · created Jul 28, 2020 by Mathieu Giraud client server-docker
- CLOSED
- 1
- 2
updated Dec 02, 2020
Pertinence / bon usage des tooltips

#4421 · created Jul 28, 2020 by Mathieu Giraud Mar 19, 2021 !-reflexion client-design client-ergonomy next-audio
- CLOSED
- 12
updated Mar 19, 2021