Issues · vidjil / vidjil

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Release 2020.05 et/ou déploiement sans release

#4278 · opened May 01, 2020 by Mathieu Giraud server-hosting
- CLOSED
- 2
updated May 07, 2020
benchmarks : remettre dans l'ordre

#4282 · opened May 06, 2020 by Mathieu Giraud cpp-speed priority-1-low
- CLOSED
- 4
- 0
updated May 20, 2020
Vidjil-algo : récupérer SIGINT

#4286 · opened May 07, 2020 by Mathieu Giraud Algo 2020.06 cpp priority-1-low
- CLOSED
- 2
updated May 20, 2020
Pourquoi multi-0 sur 2020.04 est plus rapide ?

#4287 · opened May 07, 2020 by Mathieu Giraud cpp-aho cpp-speed
- CLOSED
- 4
updated May 20, 2020
SampleSets: SET_TYPE_*

#2282 · opened Mar 22, 2017 by Mathieu Giraud Web 2017.05 !!-bug server server-sample-sets
- CLOSED
- 7
updated May 16, 2017
Multi-threader web2py

#1919 · opened Nov 29, 2016 by Vidjil Team Web 2017.03 priority-3-month server
- CLOSED
- 4
updated Mar 22, 2017
Faire au moins un test avec souris et rat

#2180 · opened Feb 14, 2017 by Mathieu Giraud Algo 2017.03 bio-species cpp dev-tests priority-1-low
- CLOSED
- 1
updated Feb 15, 2017
Tracer la version de germlines utilisée dans l'algo

#2155 · opened Feb 01, 2017 by Mathieu Giraud Algo 2017.03 #-vodooj bio-control cpp repseq-formats
- CLOSED
- 1
- 1
updated Sep 07, 2018
Compare patients lève une IOError

#1432 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server server-fuse
- CLOSED
- 0
updated Nov 29, 2016
API: erreur si mauvais appel

#1301 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go dev-robust priority-3-month server-api
- CLOSED
- 0
updated Nov 29, 2016
Le merge semble ne pas fonctionner

#2014 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Sauvegarder et utiliser l'id des samples dans les fichiers .analysis

#2176 · opened Feb 09, 2017 by Thonier Florian Web 2017.05 !!-bug !-important *-go +-deploy REN-Rennes client-database client-graph priority-4-week repseq-formats
- CLOSED
- 18
updated May 18, 2017
API/URL: faire que le modèle soit correctement initialisé si on entre l'url

#2182 · opened Feb 14, 2017 by Mathieu Giraud client client-api
- CLOSED
- 1
- 0
updated Mar 17, 2017
Avoir un meilleur moyen de modifier les configurations dans les Docker

#2469 · opened May 17, 2017 by Ryan Herbert Web 2017.05 dev-packaging server-docker
- CLOSED
- 1
- 0
updated May 23, 2017
Application des axes dans list.js et segmenter.js

#2451 · opened May 16, 2017 by Ryan Herbert Web 2017.05 client client-axis client-axis-columns dev-policy dev-refactor
- CLOSED
- 1
- 7
updated May 19, 2017
Export fasta : meilleurs pourcentages, par système

#1483 · opened Nov 29, 2016 by Vidjil Team old_tracker client-export priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Upload de gros fichiers impossible sur vda

#2149 · opened Feb 01, 2017 by Mikaël Salson Feb 22, 2017 !!-bug LIL-Lille bio-capture server server-upload
- CLOSED
- 17
updated Feb 14, 2017
"in frame only", CDR3

#1704 · opened Nov 29, 2016 by Vidjil Team old_tracker
- CLOSED
- 1
updated Dec 06, 2016
Erreur si aucun clone présent à l'ouverture d'une analyse.

#4298 · opened May 26, 2020 by Thonier Florian !!-bug *-go TOU-Toulouse client client-database
- CLOSED
- 1
- 3
updated Jun 09, 2020
Waiting for server reply / still waiting alors que le .vidjil est chargé

#4303 · opened May 26, 2020 by Mathieu Giraud !!-bug client-ergonomy client-speed
- CLOSED
- 2
- 2
updated Jun 12, 2020
annotations: menu patient

#1826 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Impossible de se connecter au serveur

#1390 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-5-today server
- CLOSED
- 0
updated Nov 29, 2016
Exporter toutes les infos...

#889 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague client client-export priority-1-low sub
- CLOSED
- 1
updated Apr 12, 2017
Indicateur de progression au "démarrage" du client, en particulier pour le lien vers la db

#2081 · opened Dec 27, 2016 by Mathieu Giraud client client-database client-ergonomy com-first-time-user server-database
- CLOSED
- 1
updated Jan 18, 2017
Release / version du browser, js/version.js

#1424 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion client priority-4-week
- CLOSED
- 0
updated Mar 14, 2017
L'export pdf ne fonctionne plus sur rbx (par exemple, Demo-LIL-L2)

#1215 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-export priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
Annulation impossible de l'upload

#2052 · opened Dec 08, 2016 by Mikaël Salson client client-database
- CLOSED
- 0
updated Dec 13, 2016
Début de V et fin de J : affichage client

#4308 · opened May 27, 2020 by Mathieu Giraud client client-aligner
- CLOSED
- 1
- 10
updated Jun 16, 2020
Release algo 2020.06

#4319 · opened Jun 05, 2020 by Mathieu Giraud Algo 2020.06 cpp
- CLOSED
- 1
updated Aug 22, 2020
Dock et URL

#4321 · opened Jun 05, 2020 by Mathieu Giraud !-important server-docker
- CLOSED
- 2
updated Jan 04, 2021
Supprimer seg_stat ?

#4334 · opened Jun 11, 2020 by Mathieu Giraud Algo 2020.06 cpp-export dev-dead-code
- CLOSED
- 1
- 3
updated Jul 28, 2020
Optimisation du chargement des distributions

#4347 · opened Jun 15, 2020 by Thonier Florian client client-speed client-virtual-clone
- CLOSED
- 2
- 8
updated Jul 28, 2020
URL courte : /b au lieu de /browser

#4357 · opened Jun 18, 2020 by Mathieu Giraud *-go client-api
- CLOSED
- 2
- 2
updated Dec 02, 2020
URL: problème si l'on recharge une page en local

#4359 · opened Jun 18, 2020 by Thonier Florian !!-bug priority-1-low server server-url server-uwsgi
- CLOSED
- 2
- 3
updated Dec 02, 2020
Documenter `stock_order`

#4364 · opened Jun 19, 2020 by Mikaël Salson client-analysis doc repseq-formats
- CLOSED
- 1
- 0
updated Jul 23, 2020
Taille des clones de distribution dans le grid V/J // Cacher les clones non intéressants

#4374 · opened Jun 23, 2020 by Mathieu Giraud !!-bug client-grid client-virtual-clone
- CLOSED
- 3
- 3
updated Jul 22, 2020
Pouvoir cacher les clones de distribution

#4375 · opened Jun 23, 2020 by Mikaël Salson LIL-Immuno client client-filter client-virtual-clone
- CLOSED
- 1
- 0
updated Jul 28, 2020
Certaines analyses on des samples en double dans le champs order

#4381 · opened Jun 24, 2020 by Thonier Florian !!-bug client client-analysis
- CLOSED
- 1
- 0
updated Jul 23, 2020
Suppression des patients

#4384 · opened Jun 26, 2020 by Aurélie CAILLAULT-VENET
- CLOSED (MOVED)
- 0
updated Aug 25, 2020
Ne pas produire les fichiers clone.fa

#4386 · opened Jun 29, 2020 by Mikaël Salson Algo 2020.08 Aug 6, 2020 !-easy *-go cpp cpp-export cpp-options server-disk
- CLOSED
- 1
- 12
updated Jul 28, 2020
Ne plus produire le `.vdj.fa`, sauf si nouvelle option

#4387 · opened Jun 29, 2020 by Mikaël Salson Algo 2020.08 !-easy *-go cpp cpp-export cpp-options server-disk
- CLOSED
- 1
- 5
updated Jul 30, 2020
Supprimer le .vidjil après l'avoir inséré en base de données

#4388 · opened Jun 29, 2020 by Mikaël Salson !-easy !-reflexion server server-disk server-task.py
- CLOSED
- 1
- 7
updated Sep 30, 2020
loadAnalysis; erreur si l'ordre des clones diffère de l'ordre du top

#4394 · opened Jul 02, 2020 by Thonier Florian !!-bug client client-analysis
- CLOSED
- 1
- 0
updated Jul 09, 2020
Affichage limité à 16 sample dans la vue d'un run

#2269 · opened Mar 20, 2017 by Thonier Florian Web 2017.03 server-fuse
- CLOSED
- 4
updated Mar 22, 2017
Le soulignement des features ne fonctionne plus dans le segmenteur

#2117 · opened Jan 19, 2017 by Mikaël Salson !!-bug client client-aligner
- CLOSED
- 3
updated Jan 23, 2017
Des tâches restent en STOPPED, pas toutes

#2053 · opened Dec 08, 2016 by Mikaël Salson server server-pre-process server-task.py
- CLOSED
- 4
updated Feb 02, 2017
Flash message... en couleur :)

#875 · opened Nov 29, 2016 by Vidjil Team old_tracker client priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Sélection par ligne/Y : désactiver quand bar plot

#1534 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-grid priority-2
- CLOSED
- 0
updated Nov 29, 2016
P-value / E-value du segmenter (nb de k-mers)

#1490 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-control bio-e-value cpp-heuristic priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Aho-Corasick: construction, implémentation

#1366 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go cpp cpp-aho priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Indication onlyV trompeuse sur anayse de capture

#2107 · opened Jan 16, 2017 by Thonier Florian Algo 2017.03 bio-e-value cpp cpp-heuristic
- CLOSED
- 5
updated Mar 17, 2017
Docker: fournir un bon moyen de changer certains mots de passe

#2100 · opened Jan 12, 2017 by Ryan Herbert !-reflexion server-docker
- CLOSED
- 3
updated Oct 25, 2017
save analysis cassé

#1846 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Impossible de « décacher » le menu de gauche

#1289 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go client-cloneList priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Serveur auquel faire référence dans les fichiers Javascript

#2094 · opened Jan 09, 2017 by Mikaël Salson server-config
- CLOSED
- 2
updated Jan 12, 2017
Inversion des axes numeriques

#4396 · opened Jul 06, 2020 by Thonier Florian !!-bug !-easy LIL-Immuno client client-axis client-grid user-request
- CLOSED
- 2
- 2
updated Jul 28, 2020
Problème d'update de la vue colorMethod dans la vue info

#4397 · opened Jul 06, 2020 by Thonier Florian !!-bug !-easy client client-update
- CLOSED
- 1
- 1
updated Jul 24, 2020
Timeline, respecter les distances entre les différents timepoints

#4405 · opened Jul 10, 2020 by Thonier Florian client client-graph feature
- CLOSED
- 2
updated Jul 10, 2020
Avec un problème d'ordre les données ne s'affichent pas correctement

#4408 · opened Jul 20, 2020 by Mikaël Salson !!-bug !-important *-go client dev-robust
- CLOSED
- 1
- 0
updated Jul 24, 2020
La légende des couleurs ne se met pas à jour

#4410 · opened Jul 22, 2020 by Mikaël Salson !!-bug *-go client client-color-by client-update
- CLOSED
- 0
updated Jul 22, 2020
Erreur Javascript `isActive` lors de la mise à jour d'un clone dans le scatterplot chez plusieurs utilisateurs

#4413 · opened Jul 22, 2020 by Mikaël Salson !!-bug client client-grid client-update
- CLOSED
- 1
- 0
updated Jul 31, 2020
URL : problème sur dev

#4415 · opened Jul 23, 2020 by Mikaël Salson !!-bug server server-url
- CLOSED
- 3
updated Jul 23, 2020
Avoir un Docker client installable 0 of 3 tasks completed

#4417 · opened Jul 28, 2020 by Mathieu Giraud client server-docker
- CLOSED
- 1
- 2
updated Dec 02, 2020
Afficher les index d'overlap

#4422 · opened Jul 28, 2020 by Mathieu Giraud app-stats client-views
- CLOSED
- 1
- 4
updated Sep 15, 2020
Regrouper TRD et TRD+, ou les comptabiliser ensemble ?

#1415 · opened Nov 29, 2016 by Vidjil Team old_tracker !-reflexion bio-control client client-export priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
"Color by tag" ne fonctionne pas après un autre "Color by" dans la liste des clones

#2029 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug client priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
getLabelText, un test cassé

#2419 · opened May 10, 2017 by Mathieu Giraud client-axis
- CLOSED
- 2
updated May 11, 2017
... sauf celles qui sont déjà mises ailleurs ? (nom/prénom/birth/id)

#890 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague client client-export priority-1-low sub
- CLOSED
- 1
updated Apr 12, 2017
Transformer hasSeg pour prendre en compte un ensemble de champs : hasSeg( ['5', '3'] )

#2085 · opened Dec 27, 2016 by Mathieu Giraud *-go client
- CLOSED
- 3
updated Jan 04, 2017
igBlast ne fonctionne plus

#2004 · opened Nov 29, 2016 by Vidjil Team old_tracker *-too-vague priority-4-week
- CLOSED
- 0
updated Nov 29, 2016
L'alignement multiple ne se fait pas nécessairement par rapport à la première séquence

#2018 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug LIL-Lille client priority-3-month server-cgi
- CLOSED
- 0
updated Nov 29, 2016
Longueur des reads d'un clone (distribution des longueurs par fenêtre) : Stats/BinReads

#872 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-control client cpp cpp-heuristic feature priority-3-month
- CLOSED
- 0
updated Nov 29, 2016
Animations superflues lors de la normalisation

#1293 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go client-graph client-normalization client-ugly priority-3-month
- CLOSED
- 0
updated Apr 03, 2017
Faire des tests pour les sélections multiples

#2093 · opened Jan 09, 2017 by Mathieu Giraud client client-grid dev-tests
- CLOSED
- 8
updated May 11, 2017
Les tests IgBlast ne fonctionnent plus

#4426 · opened Jul 28, 2020 by Thonier Florian !!-bug dev-tests dev-tests-watir
- CLOSED
- 3
updated Jul 31, 2020
URL : les clones sélectionnés ne sont plus conservés

#4428 · opened Jul 28, 2020 by Mikaël Salson !!-bug client server-url
- CLOSED
- 4
updated Jan 04, 2021
Certaines URL ne fonctionnent plus

#4429 · opened Jul 28, 2020 by Mikaël Salson !!-bug client server-url
- CLOSED
- 2
- 4
updated Dec 02, 2020
URL : faire un custom après avoir consulté des résultats ne donne pas la bonne URL

#4430 · opened Jul 28, 2020 by Mikaël Salson !!-bug client server-url
- CLOSED
- 2
- 3
updated Dec 02, 2020
Config nginx : disparition de la section sur les CGI

#4431 · opened Jul 29, 2020 by Mikaël Salson server server-admin server-cgi server-docker
- CLOSED
- 1
- 3
updated Jan 04, 2021
URL: chaîne de réécriture visible

#4432 · opened Jul 29, 2020 by Mathieu Giraud priority-1-low server-url
- CLOSED
- 2
- 1
updated Dec 02, 2020
URL: "browser" ne devrait jamais arriver spontanément

#4433 · opened Jul 29, 2020 by Mathieu Giraud server-url
- CLOSED
- 2
- 0
updated Dec 02, 2020
Certbot : documenter ce qui est fait sur vdb

#4434 · opened Jul 29, 2020 by Mikaël Salson doc server-docker
- CLOSED
- 1
updated Dec 24, 2020
Versionner docker-backup

#4435 · opened Jul 29, 2020 by Mathieu Giraud server-backup server-docker
- CLOSED
- 0
updated Jul 29, 2020
nouvelles URL, erreur de chargement

#4443 · opened Jul 30, 2020 by Thonier Florian !!-bug client server-url
- CLOSED
- 1
- 2
updated Jul 31, 2020
js: pouvoir switcher le segmenter en mode "AA", où *uniquement les CDR3* des séquences sont traduits en AA, 1 toutes les trois lettres. Par exemple lorsqu'on clique sur les bornes Cys / Phe/Trp

#957 · opened Nov 29, 2016 by Vidjil Team old_tracker *-go bio-AA client client-aligner feature priority-5-today sub
- CLOSED
- 0
updated Nov 29, 2016
segmenteur, gènes VDJ : quels objets créer ?

#2357 · opened Apr 11, 2017 by Mathieu Giraud !-reflexion client client-aligner dev-refactor
- CLOSED
- 10
updated May 15, 2017
Diversity measures : Ds vaut 42 sur Demo L4

#1795 · opened Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-5-today
- CLOSED
- 0
updated Nov 29, 2016
Release algo 2020.08

#4457 · opened Aug 21, 2020 by Mathieu Giraud Algo 2020.08 cpp
- CLOSED
- 0
updated Aug 22, 2020
Faire remonter du code quality pour l'algo

#4464 · opened Aug 27, 2020 by Mathieu Giraud cpp dev-ci dev-code-quality
- CLOSED
- 0
updated Aug 27, 2020
Docker, segmenter page et nouvelles urls

#4465 · opened Aug 28, 2020 by Mathieu Giraud server-docker user-request
- CLOSED
- 0
updated Aug 28, 2020
interesting substrings: permettre d'avoir une (ou une liste de) chaîne(s) intéressantes qui ne seront pas supprimées

#1004 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-1-low server-fuse
- CLOSED
- 0
updated Nov 29, 2016
Changer les boutons info/edit de place

#1075 · opened Nov 29, 2016 by Vidjil Team old_tracker client-ergonomy priority-1-low
- CLOSED
- 0
updated Nov 29, 2016
GermlineWithoutIndex

#1184 · opened Nov 29, 2016 by Vidjil Team old_tracker bio-germlines cpp priority-2
- CLOSED
- 0
updated Nov 29, 2016
-w all, pour une autre configuration 'clonality' très stricte, sur toute la séquence

#1642 · opened Nov 29, 2016 by Vidjil Team Algo 2017.03 PAN-Necker Paris-Pitié bio-CLL cpp cpp-options feature priority-2
- CLOSED
- 4
updated Apr 15, 2020
`-y all`: on devrait avoir les séquences consensus dans `.vdj.fa`

#2239 · opened Mar 09, 2017 by Mathieu Giraud Algo 2017.03 !!-bug +-deploy Paris-Pitié cpp repseq-formats
- CLOSED
- 2
updated Mar 29, 2017
Cachez ce clone que je ne saurais voir

#2227 · opened Mar 08, 2017 by Mathieu Giraud Web 2017.03 +-deploy client client-filter feature
- CLOSED
- 3
updated Mar 22, 2017
MiXCR : supprimer les fichiers align.vdjca

#1928 · opened Nov 29, 2016 by Vidjil Team old_tracker priority-4-week repseq-mixcr server
- CLOSED
- 0
updated Nov 29, 2016
compléter germlines.data

#1310 · opened Nov 29, 2016 by Vidjil Team old_tracker LIL-Lille bio-germlines dev-tests-notable priority-3-month sub
- CLOSED
- 0
updated Nov 29, 2016
EC-NGS in Lille, April 2018

#2333 · opened Apr 05, 2017 by Mathieu Giraud com ec-ngs
- CLOSED (MOVED)
- 0
updated Apr 05, 2017
Seuil provisoire pour les D, e-valeur

#2230 · opened Mar 08, 2017 by Mathieu Giraud Algo 2017.03 bio-e-value cpp cpp-finesegmenter cpp-finesegmenter-D priority-4-week wont-fix
- CLOSED
- 3
updated Mar 14, 2017