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vidjil
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Manual
Release 2020.05 et/ou déploiement sans release
#4278
· opened
May 01, 2020
by
Mathieu Giraud
server-hosting
CLOSED
2
updated
May 07, 2020
benchmarks : remettre dans l'ordre
#4282
· opened
May 06, 2020
by
Mathieu Giraud
cpp-speed
priority-1-low
CLOSED
4
0
updated
May 20, 2020
Vidjil-algo : récupérer SIGINT
#4286
· opened
May 07, 2020
by
Mathieu Giraud
Algo 2020.06
cpp
priority-1-low
CLOSED
2
updated
May 20, 2020
Pourquoi multi-0 sur 2020.04 est plus rapide ?
#4287
· opened
May 07, 2020
by
Mathieu Giraud
cpp-aho
cpp-speed
CLOSED
4
updated
May 20, 2020
SampleSets: SET_TYPE_*
#2282
· opened
Mar 22, 2017
by
Mathieu Giraud
Web 2017.05
!!-bug
server
server-sample-sets
CLOSED
7
updated
May 16, 2017
Multi-threader web2py
#1919
· opened
Nov 29, 2016
by
Vidjil Team
Web 2017.03
priority-3-month
server
CLOSED
4
updated
Mar 22, 2017
Faire au moins un test avec souris et rat
#2180
· opened
Feb 14, 2017
by
Mathieu Giraud
Algo 2017.03
bio-species
cpp
dev-tests
priority-1-low
CLOSED
1
updated
Feb 15, 2017
Tracer la version de germlines utilisée dans l'algo
#2155
· opened
Feb 01, 2017
by
Mathieu Giraud
Algo 2017.03
#-vodooj
bio-control
cpp
repseq-formats
CLOSED
1
1
updated
Sep 07, 2018
Compare patients lève une IOError
#1432
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
!!-bug
*-go
priority-4-week
server
server-fuse
CLOSED
0
updated
Nov 29, 2016
API: erreur si mauvais appel
#1301
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
*-go
dev-robust
priority-3-month
server-api
CLOSED
0
updated
Nov 29, 2016
Le merge semble ne pas fonctionner
#2014
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
!!-bug
client
priority-5-today
CLOSED
0
updated
Nov 29, 2016
Sauvegarder et utiliser l'id des samples dans les fichiers .analysis
#2176
· opened
Feb 09, 2017
by
Thonier Florian
Web 2017.05
!!-bug
!-important
*-go
+-deploy
REN-Rennes
client-database
client-graph
priority-4-week
repseq-formats
CLOSED
18
updated
May 18, 2017
API/URL: faire que le modèle soit correctement initialisé si on entre l'url
#2182
· opened
Feb 14, 2017
by
Mathieu Giraud
client
client-api
CLOSED
1
0
updated
Mar 17, 2017
Avoir un meilleur moyen de modifier les configurations dans les Docker
#2469
· opened
May 17, 2017
by
Ryan Herbert
Web 2017.05
dev-packaging
server-docker
CLOSED
1
0
updated
May 23, 2017
Application des axes dans list.js et segmenter.js
#2451
· opened
May 16, 2017
by
Ryan Herbert
Web 2017.05
client
client-axis
client-axis-columns
dev-policy
dev-refactor
CLOSED
1
7
updated
May 19, 2017
Export fasta : meilleurs pourcentages, par système
#1483
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
client-export
priority-3-month
CLOSED
0
updated
Nov 29, 2016
Upload de gros fichiers impossible sur vda
#2149
· opened
Feb 01, 2017
by
Mikaël Salson
Feb 22, 2017
!!-bug
LIL-Lille
bio-capture
server
server-upload
CLOSED
17
updated
Feb 14, 2017
"in frame only", CDR3
#1704
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
CLOSED
1
updated
Dec 06, 2016
Erreur si aucun clone présent à l'ouverture d'une analyse.
#4298
· opened
May 26, 2020
by
Thonier Florian
!!-bug
*-go
TOU-Toulouse
client
client-database
CLOSED
1
3
updated
Jun 09, 2020
Waiting for server reply / still waiting alors que le .vidjil est chargé
#4303
· opened
May 26, 2020
by
Mathieu Giraud
!!-bug
client-ergonomy
client-speed
CLOSED
2
2
updated
Jun 12, 2020
annotations: menu patient
#1826
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
priority-5-today
CLOSED
0
updated
Nov 29, 2016
Impossible de se connecter au serveur
#1390
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
!!-bug
*-go
priority-5-today
server
CLOSED
0
updated
Nov 29, 2016
Exporter toutes les infos...
#889
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
*-too-vague
client
client-export
priority-1-low
sub
CLOSED
1
updated
Apr 12, 2017
Indicateur de progression au "démarrage" du client, en particulier pour le lien vers la db
#2081
· opened
Dec 27, 2016
by
Mathieu Giraud
client
client-database
client-ergonomy
com-first-time-user
server-database
CLOSED
1
updated
Jan 18, 2017
Release / version du browser, js/version.js
#1424
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
!-reflexion
client
priority-4-week
CLOSED
0
updated
Mar 14, 2017
L'export pdf ne fonctionne plus sur rbx (par exemple, Demo-LIL-L2)
#1215
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
!!-bug
*-go
client-export
priority-4-week
CLOSED
0
updated
Nov 29, 2016
Annulation impossible de l'upload
#2052
· opened
Dec 08, 2016
by
Mikaël Salson
client
client-database
CLOSED
0
updated
Dec 13, 2016
Début de V et fin de J : affichage client
#4308
· opened
May 27, 2020
by
Mathieu Giraud
client
client-aligner
CLOSED
1
10
updated
Jun 16, 2020
Release algo 2020.06
#4319
· opened
Jun 05, 2020
by
Mathieu Giraud
Algo 2020.06
cpp
CLOSED
1
updated
Aug 22, 2020
Dock et URL
#4321
· opened
Jun 05, 2020
by
Mathieu Giraud
!-important
server-docker
CLOSED
2
updated
Jan 04, 2021
Supprimer seg_stat ?
#4334
· opened
Jun 11, 2020
by
Mathieu Giraud
Algo 2020.06
cpp-export
dev-dead-code
CLOSED
1
3
updated
Jul 28, 2020
Optimisation du chargement des distributions
#4347
· opened
Jun 15, 2020
by
Thonier Florian
client
client-speed
client-virtual-clone
CLOSED
2
8
updated
Jul 28, 2020
URL courte : /b au lieu de /browser
#4357
· opened
Jun 18, 2020
by
Mathieu Giraud
*-go
client-api
CLOSED
2
2
updated
Dec 02, 2020
URL: problème si l'on recharge une page en local
#4359
· opened
Jun 18, 2020
by
Thonier Florian
!!-bug
priority-1-low
server
server-url
server-uwsgi
CLOSED
2
3
updated
Dec 02, 2020
Documenter `stock_order`
#4364
· opened
Jun 19, 2020
by
Mikaël Salson
client-analysis
doc
repseq-formats
CLOSED
1
0
updated
Jul 23, 2020
Taille des clones de distribution dans le grid V/J // Cacher les clones non intéressants
#4374
· opened
Jun 23, 2020
by
Mathieu Giraud
!!-bug
client-grid
client-virtual-clone
CLOSED
3
3
updated
Jul 22, 2020
Pouvoir cacher les clones de distribution
#4375
· opened
Jun 23, 2020
by
Mikaël Salson
LIL-Immuno
client
client-filter
client-virtual-clone
CLOSED
1
0
updated
Jul 28, 2020
Certaines analyses on des samples en double dans le champs order
#4381
· opened
Jun 24, 2020
by
Thonier Florian
!!-bug
client
client-analysis
CLOSED
1
0
updated
Jul 23, 2020
Suppression des patients
#4384
· opened
Jun 26, 2020
by
Aurélie CAILLAULT-VENET
CLOSED (MOVED)
0
updated
Aug 25, 2020
Ne pas produire les fichiers clone.fa
#4386
· opened
Jun 29, 2020
by
Mikaël Salson
Algo 2020.08
Aug 6, 2020
!-easy
*-go
cpp
cpp-export
cpp-options
server-disk
CLOSED
1
12
updated
Jul 28, 2020
Ne plus produire le `.vdj.fa`, sauf si nouvelle option
#4387
· opened
Jun 29, 2020
by
Mikaël Salson
Algo 2020.08
!-easy
*-go
cpp
cpp-export
cpp-options
server-disk
CLOSED
1
5
updated
Jul 30, 2020
Supprimer le .vidjil après l'avoir inséré en base de données
#4388
· opened
Jun 29, 2020
by
Mikaël Salson
!-easy
!-reflexion
server
server-disk
server-task.py
CLOSED
1
7
updated
Sep 30, 2020
loadAnalysis; erreur si l'ordre des clones diffère de l'ordre du top
#4394
· opened
Jul 02, 2020
by
Thonier Florian
!!-bug
client
client-analysis
CLOSED
1
0
updated
Jul 09, 2020
Affichage limité à 16 sample dans la vue d'un run
#2269
· opened
Mar 20, 2017
by
Thonier Florian
Web 2017.03
server-fuse
CLOSED
4
updated
Mar 22, 2017
Le soulignement des features ne fonctionne plus dans le segmenteur
#2117
· opened
Jan 19, 2017
by
Mikaël Salson
!!-bug
client
client-aligner
CLOSED
3
updated
Jan 23, 2017
Des tâches restent en STOPPED, pas toutes
#2053
· opened
Dec 08, 2016
by
Mikaël Salson
server
server-pre-process
server-task.py
CLOSED
4
updated
Feb 02, 2017
Flash message... en couleur :)
#875
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
client
priority-3-month
CLOSED
0
updated
Nov 29, 2016
Sélection par ligne/Y : désactiver quand bar plot
#1534
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
*-go
client-grid
priority-2
CLOSED
0
updated
Nov 29, 2016
P-value / E-value du segmenter (nb de k-mers)
#1490
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
bio-control
bio-e-value
cpp-heuristic
priority-3-month
CLOSED
0
updated
Nov 29, 2016
Aho-Corasick: construction, implémentation
#1366
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
*-go
cpp
cpp-aho
priority-3-month
CLOSED
0
updated
Nov 29, 2016
Indication onlyV trompeuse sur anayse de capture
#2107
· opened
Jan 16, 2017
by
Thonier Florian
Algo 2017.03
bio-e-value
cpp
cpp-heuristic
CLOSED
5
updated
Mar 17, 2017
Docker: fournir un bon moyen de changer certains mots de passe
#2100
· opened
Jan 12, 2017
by
Ryan Herbert
!-reflexion
server-docker
CLOSED
3
updated
Oct 25, 2017
save analysis cassé
#1846
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
priority-5-today
CLOSED
0
updated
Nov 29, 2016
Impossible de « décacher » le menu de gauche
#1289
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
!!-bug
*-go
client-cloneList
priority-3-month
CLOSED
0
updated
Nov 29, 2016
Serveur auquel faire référence dans les fichiers Javascript
#2094
· opened
Jan 09, 2017
by
Mikaël Salson
server-config
CLOSED
2
updated
Jan 12, 2017
Inversion des axes numeriques
#4396
· opened
Jul 06, 2020
by
Thonier Florian
!!-bug
!-easy
LIL-Immuno
client
client-axis
client-grid
user-request
CLOSED
2
2
updated
Jul 28, 2020
Problème d'update de la vue colorMethod dans la vue info
#4397
· opened
Jul 06, 2020
by
Thonier Florian
!!-bug
!-easy
client
client-update
CLOSED
1
1
updated
Jul 24, 2020
Timeline, respecter les distances entre les différents timepoints
#4405
· opened
Jul 10, 2020
by
Thonier Florian
client
client-graph
feature
CLOSED
2
updated
Jul 10, 2020
Avec un problème d'ordre les données ne s'affichent pas correctement
#4408
· opened
Jul 20, 2020
by
Mikaël Salson
!!-bug
!-important
*-go
client
dev-robust
CLOSED
1
0
updated
Jul 24, 2020
La légende des couleurs ne se met pas à jour
#4410
· opened
Jul 22, 2020
by
Mikaël Salson
!!-bug
*-go
client
client-color-by
client-update
CLOSED
0
updated
Jul 22, 2020
Erreur Javascript `isActive` lors de la mise à jour d'un clone dans le scatterplot chez plusieurs utilisateurs
#4413
· opened
Jul 22, 2020
by
Mikaël Salson
!!-bug
client
client-grid
client-update
CLOSED
1
0
updated
Jul 31, 2020
URL : problème sur dev
#4415
· opened
Jul 23, 2020
by
Mikaël Salson
!!-bug
server
server-url
CLOSED
3
updated
Jul 23, 2020
Avoir un Docker client installable
0 of 3 tasks completed
#4417
· opened
Jul 28, 2020
by
Mathieu Giraud
client
server-docker
CLOSED
1
2
updated
Dec 02, 2020
Afficher les index d'overlap
#4422
· opened
Jul 28, 2020
by
Mathieu Giraud
app-stats
client-views
CLOSED
1
4
updated
Sep 15, 2020
Regrouper TRD et TRD+, ou les comptabiliser ensemble ?
#1415
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
!-reflexion
bio-control
client
client-export
priority-3-month
CLOSED
0
updated
Nov 29, 2016
"Color by tag" ne fonctionne pas après un autre "Color by" dans la liste des clones
#2029
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
!!-bug
client
priority-4-week
CLOSED
0
updated
Nov 29, 2016
getLabelText, un test cassé
#2419
· opened
May 10, 2017
by
Mathieu Giraud
client-axis
CLOSED
2
updated
May 11, 2017
... sauf celles qui sont déjà mises ailleurs ? (nom/prénom/birth/id)
#890
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
*-too-vague
client
client-export
priority-1-low
sub
CLOSED
1
updated
Apr 12, 2017
Transformer hasSeg pour prendre en compte un ensemble de champs : hasSeg( ['5', '3'] )
#2085
· opened
Dec 27, 2016
by
Mathieu Giraud
*-go
client
CLOSED
3
updated
Jan 04, 2017
igBlast ne fonctionne plus
#2004
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
*-too-vague
priority-4-week
CLOSED
0
updated
Nov 29, 2016
L'alignement multiple ne se fait pas nécessairement par rapport à la première séquence
#2018
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
!!-bug
LIL-Lille
client
priority-3-month
server-cgi
CLOSED
0
updated
Nov 29, 2016
Longueur des reads d'un clone (distribution des longueurs par fenêtre) : Stats/BinReads
#872
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
bio-control
client
cpp
cpp-heuristic
feature
priority-3-month
CLOSED
0
updated
Nov 29, 2016
Animations superflues lors de la normalisation
#1293
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
*-go
client-graph
client-normalization
client-ugly
priority-3-month
CLOSED
0
updated
Apr 03, 2017
Faire des tests pour les sélections multiples
#2093
· opened
Jan 09, 2017
by
Mathieu Giraud
client
client-grid
dev-tests
CLOSED
8
updated
May 11, 2017
Les tests IgBlast ne fonctionnent plus
#4426
· opened
Jul 28, 2020
by
Thonier Florian
!!-bug
dev-tests
dev-tests-watir
CLOSED
3
updated
Jul 31, 2020
URL : les clones sélectionnés ne sont plus conservés
#4428
· opened
Jul 28, 2020
by
Mikaël Salson
!!-bug
client
server-url
CLOSED
4
updated
Jan 04, 2021
Certaines URL ne fonctionnent plus
#4429
· opened
Jul 28, 2020
by
Mikaël Salson
!!-bug
client
server-url
CLOSED
2
4
updated
Dec 02, 2020
URL : faire un custom après avoir consulté des résultats ne donne pas la bonne URL
#4430
· opened
Jul 28, 2020
by
Mikaël Salson
!!-bug
client
server-url
CLOSED
2
3
updated
Dec 02, 2020
Config nginx : disparition de la section sur les CGI
#4431
· opened
Jul 29, 2020
by
Mikaël Salson
server
server-admin
server-cgi
server-docker
CLOSED
1
3
updated
Jan 04, 2021
URL: chaîne de réécriture visible
#4432
· opened
Jul 29, 2020
by
Mathieu Giraud
priority-1-low
server-url
CLOSED
2
1
updated
Dec 02, 2020
URL: "browser" ne devrait jamais arriver spontanément
#4433
· opened
Jul 29, 2020
by
Mathieu Giraud
server-url
CLOSED
2
0
updated
Dec 02, 2020
Certbot : documenter ce qui est fait sur vdb
#4434
· opened
Jul 29, 2020
by
Mikaël Salson
doc
server-docker
CLOSED
1
updated
Dec 24, 2020
Versionner docker-backup
#4435
· opened
Jul 29, 2020
by
Mathieu Giraud
server-backup
server-docker
CLOSED
0
updated
Jul 29, 2020
nouvelles URL, erreur de chargement
#4443
· opened
Jul 30, 2020
by
Thonier Florian
!!-bug
client
server-url
CLOSED
1
2
updated
Jul 31, 2020
js: pouvoir switcher le segmenter en mode "AA", où *uniquement les CDR3* des séquences sont traduits en AA, 1 toutes les trois lettres. Par exemple lorsqu'on clique sur les bornes Cys / Phe/Trp
#957
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
*-go
bio-AA
client
client-aligner
feature
priority-5-today
sub
CLOSED
0
updated
Nov 29, 2016
segmenteur, gènes VDJ : quels objets créer ?
#2357
· opened
Apr 11, 2017
by
Mathieu Giraud
!-reflexion
client
client-aligner
dev-refactor
CLOSED
10
updated
May 15, 2017
Diversity measures : Ds vaut 42 sur Demo L4
#1795
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
!!-bug
priority-5-today
CLOSED
0
updated
Nov 29, 2016
Release algo 2020.08
#4457
· opened
Aug 21, 2020
by
Mathieu Giraud
Algo 2020.08
cpp
CLOSED
0
updated
Aug 22, 2020
Faire remonter du code quality pour l'algo
#4464
· opened
Aug 27, 2020
by
Mathieu Giraud
cpp
dev-ci
dev-code-quality
CLOSED
0
updated
Aug 27, 2020
Docker, segmenter page et nouvelles urls
#4465
· opened
Aug 28, 2020
by
Mathieu Giraud
server-docker
user-request
CLOSED
0
updated
Aug 28, 2020
interesting substrings: permettre d'avoir une (ou une liste de) chaîne(s) intéressantes qui ne seront pas supprimées
#1004
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
priority-1-low
server-fuse
CLOSED
0
updated
Nov 29, 2016
Changer les boutons info/edit de place
#1075
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
client-ergonomy
priority-1-low
CLOSED
0
updated
Nov 29, 2016
GermlineWithoutIndex
#1184
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
bio-germlines
cpp
priority-2
CLOSED
0
updated
Nov 29, 2016
-w all, pour une autre configuration 'clonality' très stricte, sur toute la séquence
#1642
· opened
Nov 29, 2016
by
Vidjil Team
Algo 2017.03
PAN-Necker
Paris-Pitié
bio-CLL
cpp
cpp-options
feature
priority-2
CLOSED
4
updated
Apr 15, 2020
`-y all`: on devrait avoir les séquences consensus dans `.vdj.fa`
#2239
· opened
Mar 09, 2017
by
Mathieu Giraud
Algo 2017.03
!!-bug
+-deploy
Paris-Pitié
cpp
repseq-formats
CLOSED
2
updated
Mar 29, 2017
Cachez ce clone que je ne saurais voir
#2227
· opened
Mar 08, 2017
by
Mathieu Giraud
Web 2017.03
+-deploy
client
client-filter
feature
CLOSED
3
updated
Mar 22, 2017
MiXCR : supprimer les fichiers align.vdjca
#1928
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
priority-4-week
repseq-mixcr
server
CLOSED
0
updated
Nov 29, 2016
compléter germlines.data
#1310
· opened
Nov 29, 2016
by
Vidjil Team
old_tracker
LIL-Lille
bio-germlines
dev-tests-notable
priority-3-month
sub
CLOSED
0
updated
Nov 29, 2016
EC-NGS in Lille, April 2018
#2333
· opened
Apr 05, 2017
by
Mathieu Giraud
com
ec-ngs
CLOSED (MOVED)
0
updated
Apr 05, 2017
Seuil provisoire pour les D, e-valeur
#2230
· opened
Mar 08, 2017
by
Mathieu Giraud
Algo 2017.03
bio-e-value
cpp
cpp-finesegmenter
cpp-finesegmenter-D
priority-4-week
wont-fix
CLOSED
3
updated
Mar 14, 2017
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