Issues · vidjil / vidjil

New issue

sample_set.delete() ne devrait généralement pas supprimer les samples et les résultats

#2591 · created Aug 25, 2017 by Mathieu Giraud !-important !-security *-go server
- CLOSED
- 1
- 6
updated Mar 30, 2021
Mettre à disposition les reads segmentés

#1671 · created Nov 29, 2016 by Vidjil Team Web 2017.05 *-go +-deploy client client-export feature priority-3-month server server-config
- CLOSED
- 6
updated May 23, 2017
Ne pas lancer fuse quand le nombre de samples est trop important ?

#2011 · created Nov 29, 2016 by Vidjil Team Web 2017.05 !-reflexion +-deploy KIE-Kiel LIL-Lille priority-3-month server server-fuse server-sample-sets server-speed
- CLOSED
- 16
updated May 22, 2017
Interdire la suppression d'une config qui a servi

#2302 · created Mar 31, 2017 by Mikaël Salson +-merge dev-robust server server-database
- CLOSED
- 1
- 8
updated Jul 12, 2017
Avoir un retour à l'utilisateur lorsqu'on choisit un fichier "network"

#2522 · created Jun 09, 2017 by Mathieu Giraud prod-server-lil +-merge LIL-Lille server server-mounted-files user-request
- CLOSED
- 1
- 1
updated Jul 12, 2017
Téléchargement des fichiers produits par les logiciels : le lien arrive trop tôt

#2481 · created May 22, 2017 by Mikaël Salson !!-bug client-export server
- CLOSED
- 0
updated Jul 05, 2017
Fichiers "network": 404 avec le lien "dl" dans sample_set/index.html

#2524 · created Jun 09, 2017 by Mathieu Giraud prod-server-lil LIL-Lille server server-mounted-files user-request
- CLOSED
- 1
updated Jul 05, 2017
Fichiers "network": affichage de leur taille et de leur état dans sample_set/index.html

#2523 · created Jun 09, 2017 by Mathieu Giraud prod-server-lil LIL-Lille server server-mounted-files user-request
- CLOSED
- 4
updated Mar 06, 2018
La suppression des résultats et fichier de séquence provoque une erreur serveur

#2478 · created May 22, 2017 by Mikaël Salson Web 2017.05 !!-bug +-merge server
- CLOSED
- 1
- 2
updated May 23, 2017
Rechercher dans les runs, recherche dans les patients

#2216 · created Mar 02, 2017 by Mikaël Salson !!-bug +-working server
- CLOSED
- 2
updated Nov 22, 2017
SampleSets: SET_TYPE_SEQUENCE_FILE

#2284 · created Mar 22, 2017 by Mathieu Giraud +-deploy dev-dead-code server server-sample-sets
- CLOSED
- 5
updated Jun 08, 2017
Incident 2017-04-04: Tous les jobs sont en FAILED

#2321 · created Apr 04, 2017 by Mikaël Salson !!-bug !!-crisis server
- CLOSED (MOVED)
- 1
updated May 22, 2017
Serveur anormalement lent

#2086 · created Dec 29, 2016 by Thonier Florian !!-bug !!-crisis priority-5-today server server-hosting server-speed
- CLOSED (MOVED)
- 1
updated May 22, 2017
Le compare samples ne fonctionne pas avec les sets

#2466 · created May 16, 2017 by Ryan Herbert Web 2017.05 !!-bug +-merge priority-5-today server server-compare-samples
- CLOSED
- 1
- 0
updated May 22, 2017
Compare samples sans association des samples à un patient

#2406 · created May 05, 2017 by Mikaël Salson !!-bug +-working server server-compare-samples
- CLOSED
- 0
updated May 22, 2017
La page de modification d'un utilisateur n'existe plus

#2381 · created Apr 18, 2017 by Mikaël Salson Web 2017.05 !!-bug +-deploy server server-auth
- CLOSED
- 1
updated May 22, 2017
Les groupes vides ne s'affichent pas dans la liste des groupes

#2371 · created Apr 13, 2017 by Ryan Herbert Web 2017.05 !!-bug +-deploy server
- CLOSED
- 1
updated May 22, 2017
Pas d'accès aux permissions d'un sample set/patient

#2350 · created Apr 10, 2017 by Mikaël Salson !!-bug *-go server server-auth
- CLOSED
- 1
updated May 22, 2017
Le status du pre-process n'est pas retiré après avoir désélectionné le pre-process en éditant le sample.

#2343 · created Apr 06, 2017 by Ryan Herbert !!-bug server
- CLOSED
- 0
updated May 22, 2017
La suppression d'un sample set ramène sur une « None » list

#2325 · created Apr 04, 2017 by Mikaël Salson Web 2017.05 !!-bug +-deploy server server-sample-sets
- CLOSED
- 2
updated May 22, 2017
Le contrôleur run redirige sur l'ancien contrôleur run/index

#2293 · created Mar 24, 2017 by Ryan Herbert !!-bug dev-refactor server
- CLOSED
- 0
updated May 22, 2017
Un run/patient n'a plus de sample_set associé suite à une suppression

#2290 · created Mar 24, 2017 by Mikaël Salson !!-bug *-go priority-4-week server server-sample-sets
- CLOSED
- 7
updated May 22, 2017
Les permissions ne sont pas vérifiées dans lors d'une édition de sequence_file

#2122 · created Jan 23, 2017 by Ryan Herbert !!-bug !-security +-deploy server
- CLOSED
- 2
updated May 22, 2017
Vérifier qu'un élément existe avant d'y accéder

#2112 · created Jan 18, 2017 by Mikaël Salson !!-bug server
- CLOSED
- 2
updated May 22, 2017
AttributeError: 'NoneType' object has no attribute id

#2111 · created Jan 17, 2017 by Mikaël Salson !!-bug server
- CLOSED
- 2
updated May 22, 2017
Sur dev.vidjil.org le patient édité n'est pas celui attendu

#2105 · created Jan 12, 2017 by Mikaël Salson !!-bug server
- CLOSED
- 1
updated May 22, 2017
Liste de patients affiche <type 'type'> à la place de patients

#2104 · created Jan 12, 2017 by Mikaël Salson !!-bug server
- CLOSED
- 1
updated May 22, 2017
Forcer la mise à jour des fichiers en cache.

#2498 · created May 24, 2017 by Ryan Herbert server
- CLOSED
- 1
- 0
updated Oct 19, 2017
"compare samples for this patient" pour les sample sets

#2512 · created Jun 07, 2017 by Mathieu Giraud server
- CLOSED
- 1
updated Jun 07, 2017
Erreur de permission dans l'utilisation du compare samples

#2518 · created Jun 07, 2017 by Mikaël Salson !!-bug PAR-Debré priority-4-week server server-compare-samples server-groups
- CLOSED
- 8
updated Sep 12, 2017
Mettre les noms de famille dans les logs

#2521 · created Jun 08, 2017 by Mikaël Salson Web 2017.09 +-merge bio-control server
- CLOSED
- 1
- 0
updated Jul 07, 2017
Restes de "patient" pour les sample sets

#2519 · created Jun 07, 2017 by Mathieu Giraud +-merge dev-policy doc server server-sample-sets
- CLOSED
- 4
updated Sep 12, 2017
CORS: Le lien logout ne fonctionne pas quand le client et le serveur ne sont pas au même endroit

#2477 · created May 22, 2017 by Mikaël Salson Web 2021.05 !!-bug +-merge dev-dead-code server
- CLOSED
- 3
- 28
updated Apr 15, 2021
Les URL avec le paramètre patient fonctionnent-elles encore ?

#3062 · created Feb 23, 2018 by Mikaël Salson Web 2018.01 !!-bug +-merge client-api server server-database
- CLOSED
- 2
updated Mar 13, 2018
Erreur sur l'upload de fichiers "doublons"

#2855 · created Nov 22, 2017 by Ryan Herbert !!-bug +-merge server
- CLOSED
- 1
- 0
updated Nov 30, 2017
Charger les permissions en une fois dans SampleSetList

#2476 · created May 19, 2017 by Mikaël Salson +-merge server server-database server-speed
- CLOSED
- 1
- 5
updated Jul 12, 2017
"Vidjil is loading": Le bouton login fonctionne-t-il du premier coup ?

#2525 · created Jun 09, 2017 by Mathieu Giraud LIL-Lille client-ergonomy server server-auth user-request
- CLOSED
- 1
- 8
updated Apr 13, 2018
Faut-il maintenir un groupe vide

#2536 · created Jun 15, 2017 by Thonier Florian !-reflexion LIL-Lille server server-groups
- CLOSED
- 4
updated Jun 15, 2017
Sauvegarde de l'analyse ne fonctionne pas

#2021 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-5-today server
- CLOSED
- 0
updated Jul 05, 2017
Lorsque le run est mal renseigné, ne pas permettre la soumission du formulaire

#2000 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-2 server
- CLOSED
- 0
updated Jul 05, 2017
Base de données remplie avec des scheduler_task et scheduler_run

#1948 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-5-today server server-database server-pre-process
- CLOSED
- 0
updated Jul 05, 2017
Pre-process is still pending, re-schedule

#1931 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug priority-4-week server server-pre-process server-uwsgi
- CLOSED
- 0
updated Jul 05, 2017
Export/import d'un patient/run/sample_set ou d'un ensemble de samples

#2063 · created Dec 13, 2016 by Thonier Florian prod-server-lil !-reflexion #-privacy client-database server server-admin server-database server-sample-sets
- CLOSED
- 5
updated Oct 27, 2017
Quatre fichiers de résultats (sur une même config) mais seulement deux fichiers fusés

#1523 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug *-go priority-4-week server server-fuse
- CLOSED
- 0
updated Jul 10, 2017
Pagination de la requête patient/sample_set

#2037 · created Dec 02, 2016 by Ryan Herbert Web 2017.03 client-ergonomy server server-sample-sets server-speed
- CLOSED
- 3
updated Jul 10, 2017
Tip of the day : implémentation

#2582 · created Aug 23, 2017 by Mathieu Giraud Nov 10, 2017 *-go com com-first-time-user doc server
- CLOSED
- 8
updated Nov 17, 2017
Admin: Liste des jobs en attente, en cours depuis l'interface admin

#2605 · created Sep 01, 2017 by Thonier Florian LIL-Lille feature server server-admin server-task.py
- CLOSED
- 1
- 3
updated Nov 18, 2020
My Account : liste des derniers jobs depuis l'interface d'un utilisateur

#2606 · created Sep 01, 2017 by Thonier Florian *-go Paris-Pitié client-database client-menu server server-auth server-ergonomy server-my-account user-request
- CLOSED
- 1
- 7
updated Nov 18, 2020
Déployer manuellement le serveur (feature-s) via Docker

#2637 · created Sep 15, 2017 by Mathieu Giraud dev-cd server server-docker
- CLOSED
- 5
updated Jun 25, 2020
pear : resultat afficher en success malgré un fail.

#2677 · created Sep 28, 2017 by Thonier Florian !!-bug com com-first-time-user server server-pre-process
- CLOSED
- 6
updated Apr 22, 2020
Bug au remplissage du champ patient d'un sample

#2702 · created Oct 10, 2017 by Mikaël Salson Web 2017.11 !!-bug *-go server server-sample-sets
- CLOSED
- 1
- 4
updated Nov 17, 2017
Faire un "compare" sur un seul sample

#2726 · created Oct 13, 2017 by Ryan Herbert +-deploy Paris-Pitié server server-compare-samples server-fuse user-request
- CLOSED
- 2
- 15
updated Nov 20, 2020
Erreur serveur Demo L4 / multi-inc-xxx, fused file not found

#2765 · created Oct 31, 2017 by Ghost User !!-bug com-first-time-user server
- CLOSED
- 3
updated Oct 31, 2017
Incident 2017-11-22 : Upload impossible ?

#2849 · created Nov 22, 2017 by Mathieu Giraud !!-crisis PAN-Necker server server-upload
- CLOSED
- 1
- 16
updated Feb 16, 2018
Augmenter le nombre de CPU pouvant être utilisés sur le serveur

#1146 · created Nov 29, 2016 by Vidjil Team old_tracker *-go priority-5-today server server-hosting
- CLOSED
- 0
updated Nov 22, 2017
Web application - Server

#4 · created Nov 24, 2016 by Mathieu Giraud !-security +-roadmap server server-api server-database server-hosting server-monitor
- CLOSED
- 1
updated Apr 03, 2019
makefile global

#1027 · created Nov 29, 2016 by Vidjil Team old_tracker !-important priority-2 server server-hosting sub
- CLOSED
- 0
updated Nov 22, 2017
makefile server

#1026 · created Nov 29, 2016 by Vidjil Team old_tracker !-important priority-2 server server-hosting sub
- CLOSED
- 0
updated Nov 22, 2017
Script de déploiement / packages utilisés

#1025 · created Nov 29, 2016 by Vidjil Team old_tracker !-important priority-2 server server-hosting
- CLOSED
- 1
updated Nov 22, 2017
Récupérer des données par FTP/HTTP/NFS ou autre

#1588 · created Nov 29, 2016 by Vidjil Team Web 2017.03 !-reflexion LIL-Lille priority-2 server server-database server-hosting server-integration server-mounted-files
- CLOSED
- 7
updated Nov 22, 2017
Séparation serveurs : app (html/js) // vda

#1448 · created Nov 29, 2016 by Vidjil Team !-reflexion priority-1-low server server-hosting server-upload
- CLOSED (MOVED)
- 0
updated Nov 22, 2017
Empêcher l'upload ou de lancer des jobs lorsqu'il ne reste plus assez d'espace disque

#2007 · created Nov 29, 2016 by Vidjil Team old_tracker dev-robust priority-3-month server server-hosting
- CLOSED
- 1
updated Jan 08, 2020
Récupérer des données par FTP/HTTP ou autre

#1475 · created Nov 29, 2016 by Vidjil Team priority-1-low server server-hosting server-integration server-upload
- CLOSED
- 1
updated Nov 22, 2017
Création batch de plusieurs patients/runs/sets

#2878 · created Nov 22, 2017 by Mathieu Giraud Paris-Pitié server server-sample-sets user-request
- CLOSED
- 15
updated Oct 21, 2020
Doit-on cacher ou inactiver les boutons cliqués dans l'interface ?

#2894 · created Nov 24, 2017 by Ryan Herbert client-ergonomy server
- CLOSED
- 12
updated Sep 24, 2018
Admin / My Account : controleur et vue pour connaître son nombre d'échantillons/patients/runs/sets

#2951 · created Dec 13, 2017 by Mathieu Giraud #-vidjilnet server server-auth server-my-account
- CLOSED
- 1
- 2
updated Nov 18, 2020
My Account: informations sur les groupes

#2952 · created Dec 13, 2017 by Mathieu Giraud LIL-Lille server server-auth server-my-account user-request user-traceability
- CLOSED
- 1
- 1
updated Nov 18, 2020
Choix du dernier set/run lors de l'import d'un nouvel échantillon

#2961 · created Dec 20, 2017 by Anne de Septenville Paris-Pitié client-autocomplete feature server server-sample-sets
- CLOSED
- 5
updated Dec 20, 2017
Auto-complétion au clic avec les derniers set modifiés

#2963 · created Dec 20, 2017 by Mikaël Salson Paris-Pitié client-autocomplete feature server server-sample-sets user-request
- CLOSED
- 1
- 2
updated Mar 21, 2018
Pas d'avertissement lorsque la date rentrée pour un sample est incorrecte

#2997 · created Jan 18, 2018 by Mikaël Salson Web 2018.01 !!-bug LIL-Lille client-ergonomy server server-sample-sets
- CLOSED
- 1
- 2
updated Mar 21, 2018
Rajouter "real info" pour les permissions par défaut lors de la création des utilisateurs

#3001 · created Jan 19, 2018 by Mathieu Giraud *-go server server-auth server-groups server-permissions support-policy
- CLOSED
- 1
- 3
updated Mar 30, 2021
Compléter la documentation sur Docker

#3037 · created Feb 06, 2018 by Mikaël Salson doc server server-docker
- CLOSED
- 1
updated Oct 16, 2018
Stats sur un ensemble de samples : contrôleur

#3041 · created Feb 09, 2018 by Mathieu Giraud *-go feature priority-4-week server server-qc-stats
- CLOSED
- 15
updated Sep 14, 2018
avoir dans le mail "new sequences" le nom de l'utilisateur

#3051 · created Feb 15, 2018 by Thonier Florian *-go com-mail-template feature server
- CLOSED
- 1
- 2
updated Feb 20, 2018
Nommer plus clairement les groupes utilisateurs

#2024 · created Nov 29, 2016 by Vidjil Team *-go priority-2 server server-auth server-groups
- CLOSED
- 3
updated Jul 01, 2020
Problème d'encodage des noms accentués dans les logs

#3055 · created Feb 20, 2018 by Mikaël Salson !!-bug *-go server
- CLOSED
- 1
- 0
updated Mar 22, 2018
Tests unitaires serveur sur gitlab CI

#3061 · created Feb 21, 2018 by Mathieu Giraud dev-ci dev-tests server
- CLOSED
- 1
- 1
updated Mar 06, 2018
Avoir une méthode non bloquante pour 'compare patient'

#1508 · created Nov 29, 2016 by Vidjil Team old_tracker !!-bug !-reflexion priority-3-month server server-compare-samples
- CLOSED
- 0
updated Feb 23, 2018
conserver le path lors du chargement de plusieurs fichiers

#3063 · created Feb 27, 2018 by Thonier Florian !-reflexion LIL-Lille client client-accessibility feature server
- CLOSED
- 1
updated Mar 05, 2018
Réparer les tests unit-server

#3065 · created Feb 27, 2018 by Mathieu Giraud dev-ci dev-tests server
- CLOSED
- 1
- 2
updated May 30, 2018
Multi-upload : les pre-process ne sont pas lancés

#3073 · created Mar 06, 2018 by Mikaël Salson !!-bug *-go server server-sample-sets server-upload
- CLOSED
- 1
- 0
updated Mar 21, 2018
Les vues patient/index.html et run/index.html sont-elles encore utiles ?

#3076 · created Mar 06, 2018 by Mikaël Salson dev-dead-code server server-sample-sets
- CLOSED
- 1
- 1
updated Nov 21, 2018
Erreur serveur en visualisant des résultats sur la branche feature-w/multi_upload

#3077 · created Mar 06, 2018 by Mikaël Salson !!-bug *-go server server-sample-sets shell-log
- CLOSED
- 4
updated Apr 05, 2018
Parfois un job server-unit ne termine pas

#3085 · created Mar 15, 2018 by Mathieu Giraud dev-build dev-tests server
- CLOSED
- 2
updated Mar 20, 2018
Add set : erreur serveur si unicode dans le nom

#3097 · created Mar 22, 2018 by Mathieu Giraud !!-bug client-i18n server
- CLOSED
- 3
updated Mar 22, 2018
Les utilisateurs ne peuvent pas supprimer ou éditer les nouveaux sample sets créés

#3138 · created Apr 05, 2018 by Mikaël Salson !!-bug !-important server server-sample-sets
- CLOSED
- 4
updated Apr 05, 2018
Récupérer les patients à partir d'un run ou d'un set

#3150 · created Apr 09, 2018 by Mathieu Giraud Paris-Pitié server server-sample-sets user-request
- CLOSED
- 2
updated Mar 25, 2019
Plusieurs configs ne sont plus visibles

#3157 · created Apr 10, 2018 by Mikaël Salson !!-bug !-important server server-admin server-config
- CLOSED
- 9
updated May 28, 2020
La liste patients met beaucoup trop de temps à se charger

#3169 · created Apr 13, 2018 by Mikaël Salson !-important server server-database server-speed
- CLOSED
- 3
- 33
updated Feb 11, 2021
Ajout de samples : « specific set » est peu clair

#3178 · created Apr 16, 2018 by Mikaël Salson !-reflexion bikeshedding client-ergonomy server
- CLOSED
- 1
updated Apr 17, 2018
Bug lors de l'ajout de samples à plusieurs patients

#3199 · created Apr 19, 2018 by Mikaël Salson !!-bug !!-crisis !-important *-go LIL-Lille server server-sample-sets
- CLOSED
- 1
- 2
updated Jun 13, 2018
Supprimer un sample set supprime forcément les fichiers de séquence : laisser le choix

#3200 · created Apr 19, 2018 by Mikaël Salson feature server server-sample-sets
- CLOSED
- 0
updated Jun 24, 2020
Plus d'enregistrement du first login/last login

#3202 · created Apr 20, 2018 by Thonier Florian !!-bug client client-database server server-admin
- CLOSED
- 1
- 3
updated Oct 02, 2018
Éditer un sample qui possède un pre-process empêche de relancer une analyse dessus

#3213 · created May 03, 2018 by Mikaël Salson !!-bug server server-pre-process server-task.py
- CLOSED
- 1
- 1
updated Sep 24, 2019
Un process peut se lancer avant son pre-process si R2 n'a pas fini d'être téléchargé

#3289 · created Jun 15, 2018 by Mikaël Salson !!-bug !!-crisis !-important priority-4-week server server-pre-process server-task.py
- CLOSED
- 1
- 2
updated Jul 03, 2018
Optimiser la page des groupes

#3352 · created Jul 10, 2018 by Ryan Herbert !-important server server-admin
- CLOSED
- 1
- 8
updated Oct 05, 2018
Le tri de la liste sample_set ne fonctionne pas correctement

#3359 · created Jul 11, 2018 by Ryan Herbert !!-bug server
- CLOSED
- 1
- 0
updated Jul 13, 2018
Statistiques : tester, mettre en production pour tous

#3436 · created Aug 10, 2018 by Mathieu Giraud feature server
- CLOSED
- 1
- 1
updated Oct 02, 2018
Environnement de review pour les feature-s

#3442 · created Aug 30, 2018 by Mathieu Giraud dev-gitlab dev-tests server server-docker
- CLOSED
- 0
updated Oct 26, 2018
serveur delocalisé; problème à l'installation; job coincés en queue

#3445 · created Aug 31, 2018 by Thonier Florian doc repseq-community server server-admin user-request
- CLOSED
- 3
updated Feb 09, 2021