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vidjil
vidjil
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Axes génériques, depuis .json (coverage, evalue...)
#1473
· created
Nov 29, 2016
by
Vidjil Team
*-go
bio-control
client
client-axis
feature
priority-3-month
repseq-formats
0
updated
May 22, 2017
Être plus fin dans le choix du parseur BAM ou Fasta/Fastq
#2550
· created
Jul 07, 2017
by
Mathieu Giraud
cpp
cpp-options
repseq-formats
2
updated
Jul 07, 2017
Exploiter les qualités des .fastq ?
#1544
· created
Nov 29, 2016
by
Vidjil Team
!-hard
cpp
cpp-heuristic
priority-1-low
repseq-formats
1
updated
Sep 16, 2019
Segmenteur : l'ID devrait être souligné et non réécrit
#2672
· created
Sep 26, 2017
by
Mikaël Salson
client
client-aligner
client-ergonomy
repseq-formats
8
updated
Oct 05, 2017
Mettre à jour (et renommer) format-analysis.org
#2797
· created
Nov 17, 2017
by
Mathieu Giraud
Web 2018.01
repseq-formats
repseq-platform
1
updated
Sep 07, 2018
Utilisation de IGoR sur quelques séquences pour affichage dans le client
#2873
· created
Nov 22, 2017
by
Mathieu Giraud
client
repseq-formats
repseq-platform
server-fuse
0
updated
Nov 22, 2017
Afficher mieux les infos de longueur dans l'info, _clone_average_length ?
#2906
· created
Nov 29, 2017
by
Mathieu Giraud
!-reflexion
bio-control
repseq-formats
0
updated
Nov 29, 2017
Stocker la config dans le .vidjil ?
#2938
· created
Dec 06, 2017
by
Mathieu Giraud
cpp-export
repseq-formats
wont-fix
0
updated
Dec 06, 2017
Farie des wrappers pour d'autres logiciels RepSeq
#2955
· created
Dec 13, 2017
by
Mathieu Giraud
repseq-formats
repseq-platform
0
updated
Dec 13, 2017
Option pour afficher le json bien formaté sur stdout et/ou format_json plus intéressant
#3000
· created
Jan 19, 2018
by
Mathieu Giraud
cpp-export
dev-tests
priority-1-low
repseq-formats
1
updated
Jan 19, 2018
Mettre en json structué des infos pour l'instant dans le log
#3049
· created
Feb 09, 2018
by
Mathieu Giraud
json-export
bio-control
repseq-formats
server-qc-stats
2
updated
Oct 16, 2018
Récupérer des infos des pré-process : mécanisme
#3154
· created
Apr 09, 2018
by
Mathieu Giraud
!-hard
#-quality
bio-control
repseq-formats
server-database
server-fuse
server-pre-process
server-task.py
15
updated
Jan 22, 2021
json: simple ou double quotes ?
#3159
· created
Apr 10, 2018
by
Mathieu Giraud
bikeshedding
dev-policy
repseq-formats
0
updated
Apr 10, 2018
Vérifier le format d'IMGT
#3161
· created
Apr 10, 2018
by
Mathieu Giraud
dev-tests
dev-tests-should-get
repseq-IMGT
repseq-formats
3
updated
Apr 10, 2018
.vidjil: better document `top` and/or make it optionnal
#3196
· created
Apr 17, 2018
by
Mathieu Giraud
doc
repseq-formats
server-fuse
8
updated
Jul 23, 2019
À quoi sert le ref dans les fichiers .g / à quoi sert germline_id
#3362
· created
Jul 12, 2018
by
Mikaël Salson
bio-germlines
doc
repseq-formats
6
updated
Sep 07, 2018
Documenter le format utilisé dans les fichiers `.g`
#3363
· created
Jul 12, 2018
by
Mikaël Salson
bio-germlines
doc
repseq-formats
1
updated
Sep 07, 2018
Use a fasta file for -l ?
#3563
· created
Oct 16, 2018
by
Mathieu Giraud
cpp
cpp-options
repseq-formats
1
updated
Oct 16, 2018
Supprimer / rationaliser le format .vdj des headers ?
#3566
· created
Oct 17, 2018
by
Mathieu Giraud
!-reflexion
bikeshedding
cpp
repseq-formats
4
updated
Oct 24, 2018
AIRR pour la plateforme web
#3591
· created
Oct 24, 2018
by
Mathieu Giraud
!-reflexion
client
repseq-community
repseq-formats
repseq-formats-airr
7
updated
Jan 15, 2021
Document normalize_reads in doc/vidjil-format.md
#3646
· created
Nov 30, 2018
by
Mathieu Giraud
*-go
Boldrini-Brasil
bio-mrd
doc
repseq-formats
1
updated
Feb 03, 2021
Grep reads et vidjil-algo : le fichier résultant peut mélanger FASTA et FASTQ
#3852
· created
Mar 20, 2019
by
Mikaël Salson
cpp
cpp-export
repseq-formats
6
updated
Mar 21, 2019
Que renseigner dans le .vidjil pour que le "color by N" soit fonctionnel ?
#4088
· created
Dec 10, 2019
by
Mathieu Giraud
client-color-by
doc
repseq-formats
0
updated
Dec 10, 2019
Virgule dans l'export AIRR en cas d'alternatives trouvées par IMGT/V-QUEST
#4099
· created
Dec 10, 2019
by
Mathieu Giraud
repseq-IMGT
repseq-formats
repseq-formats-airr
0
updated
Dec 10, 2019
Zone de commentaire par clone sur le rapport et/ou le panel info d'un clone
#4156
· created
Jan 23, 2020
by
Thonier Florian
!-reflexion
REN-Rennes
client
client-rapport
feature
repseq-formats
3
updated
Jan 23, 2020
evalue D et autres dans .vidjil
#4316
· created
Jun 03, 2020
by
Mathieu Giraud
bikeshedding
bio-e-value
repseq-formats
0
updated
Jun 03, 2020
Faire évoluer vidjil_format ?
#4317
· created
Jun 03, 2020
by
Mathieu Giraud
!-reflexion
doc
repseq-formats
2
updated
Jun 11, 2020
0-based / 1-based
#4327
· created
Jun 10, 2020
by
Mathieu Giraud
cpp-export
doc
repseq-formats
1
updated
Jun 16, 2020
Sample metadata: How could we specify in a .vidjil file that a sample is a diagnosis sample?
#4452
· created
Aug 05, 2020
by
Mathieu Giraud
!-reflexion
bio-mrd
repseq-formats
0
updated
Aug 05, 2020
Galaxy
#1431
· created
Nov 29, 2016
by
Vidjil Team
priority-2
repseq-formats
repseq-galaxy
repseq-platform
1
updated
Feb 01, 2017
Positions dans les séquences commençant à 1
#1528
· created
Nov 29, 2016
by
Vidjil Team
old_tracker
!-hard
client
cpp
repseq-formats
0
updated
Nov 30, 2016
clones : null si pas de clones
#1773
· created
Nov 29, 2016
by
Vidjil Team
!!-bug
cpp
priority-2
repseq-formats
server-fuse
1
5
updated
Feb 03, 2020
Export ou import VDJtools
#1785
· created
Nov 29, 2016
by
Vidjil Team
old_tracker
priority-2
repseq-formats
0
updated
Nov 29, 2016
VDDJ et sortie json
#1792
· created
Nov 29, 2016
by
Vidjil Team
old_tracker
PAN-Necker
cpp-finesegmenter
priority-2
repseq-formats
0
updated
Nov 29, 2016
VidjilFieldExtractor, extract : autres infos, FR1234/CDR123
#1841
· created
Nov 29, 2016
by
Vidjil Team
client-aligner
priority-2
repseq-formats
repseq-mixcr
repseq-platform
1
updated
May 28, 2020
Fichiers avec plus de 2G reads et int overflow
#1968
· created
Nov 29, 2016
by
Vidjil Team
bio-analyze-more
cpp
priority-2
repseq-formats
0
updated
Feb 01, 2017
app/analyze: exposer/documenter une API
#1992
· created
Nov 29, 2016
by
Vidjil Team
app-analyze
collaboration
doc
priority-2
repseq-Nikos
repseq-Shugay
repseq-formats
1
updated
Apr 11, 2017
Format JSON pour réponse
#2034
· created
Nov 30, 2016
by
Mathieu Giraud
doc
priority-2
repseq-formats
repseq-platform
server-cgi
2
updated
Apr 03, 2017
Features à l'extérieur d'une séquence
#2049
· created
Dec 08, 2016
by
Mikaël Salson
bio-primers
client
client-aligner
repseq-formats
1
updated
Oct 14, 2020
Faire que la liste des clones et l'aligneur soient copiables en texte
#2068
· created
Dec 15, 2016
by
Mathieu Giraud
app-analyze
client
client-aligner
client-cloneList
client-ergonomy
client-export
repseq-formats
2
updated
Apr 01, 2021
VDJML
#2078
· created
Dec 23, 2016
by
Mathieu Giraud
client-export
repseq-community
repseq-formats
4
updated
Nov 20, 2018
Champ 'germlines' dans le .vidjil et germlines par défaut
#2130
· created
Jan 25, 2017
by
Mathieu Giraud
bio-germlines
bio-species
client
doc
repseq-formats
1
updated
Apr 25, 2017
Inclure le .g dans le .vidjil
#2195
· created
Feb 20, 2017
by
Mathieu Giraud
!-reflexion
bio-germlines
repseq-formats
wont-fix
2
updated
Apr 25, 2017
Segmenter et MiXCR: on ne voit pas les CDR3, ni les bords V/J précis
#2288
· created
Mar 22, 2017
by
Mathieu Giraud
bio-AA
bio-analyze-more
client
client-aligner
repseq-Shugay
repseq-formats
repseq-mixcr
2
updated
Sep 27, 2017
Affichage de la qualité dans l'aligneur : bikeshedding
#2313
· created
Apr 04, 2017
by
Mathieu Giraud
Web 2021.05
Paris-Pitié
bio-control
client
client-aligner
feature
repseq-formats
8
updated
Apr 08, 2021
app/analyze : conserver lien entre séquence et dénomination
#2329
· created
Apr 05, 2017
by
Thonier Florian
app-analyze
client-cloneList
repseq-IMGT
repseq-formats
8
updated
Oct 18, 2018
Stocker les informations de pairage des chaînes / de single cell
#2344
· created
Apr 07, 2017
by
Mikaël Salson
!-reflexion
bio-barcodes-umi
bio-paired-chains
repseq-formats
server-fuse
7
updated
Dec 13, 2019
Documenter comment travailler sur un format .vidjil
#4570
· created
Nov 20, 2020
by
Mathieu Giraud
!-easy
*-go
Paris-Pitié
doc
repseq-formats
0
updated
Feb 03, 2021
vidjil-format.md : mieux tester / linter / verrouiller
#4676
· created
Feb 03, 2021
by
Mathieu Giraud
!-reflexion
dev-tests
doc
repseq-formats
0
updated
Feb 03, 2021
Récupérer un clone ou quelques clones en .json
#4719
· created
Mar 16, 2021
by
Mathieu Giraud
!-reflexion
client
client-export
repseq-formats
1
updated
Mar 31, 2021
Se souvenir du nombre de reads initial avant filtrage
#4724
· created
Mar 17, 2021
by
Mathieu Giraud
repseq-formats
0
updated
Mar 17, 2021