integraal/integraal-explanation/src/test/java/fr/boreal/test/explanation/unit_tests/explainer/kb_gri_baseline_marco/RuleSupportExplainerTest.java

+package fr.boreal.test.explanation.unit_tests.explainer.kb_gri_baseline_marco;
+
+import fr.boreal.explanation.kb_gri.explainers.static_gri.RuleSupportExplainer_KBGRI;
+import fr.boreal.explanation.kb_gri.explainers.static_gri_baseline.RuleSupportExplainer_Baseline;
+import fr.boreal.explanation.kb_gri.rule_transformation.GRIRuleTransformer;
+import fr.boreal.model.kb.api.FactBase;
+import fr.boreal.model.kb.api.KnowledgeBase;
+import fr.boreal.model.kb.api.RuleBase;
+import fr.boreal.model.kb.impl.KnowledgeBaseImpl;
+import fr.boreal.model.kb.impl.RuleBaseImpl;
+import fr.boreal.model.logicalElements.api.Atom;
+import fr.boreal.model.logicalElements.api.Predicate;
+import fr.boreal.storage.natives.SimpleInMemoryGraphStore;
+import fr.boreal.test.explanation.TestData;
+import org.junit.jupiter.api.Assertions;
+import org.junit.jupiter.api.BeforeEach;
+import org.junit.jupiter.api.Test;
+
+import java.util.List;
+import java.util.Set;
+
+public class RuleSupportExplainerTest {
+    RuleSupportExplainer_Baseline explainer;
+    GRIRuleTransformer griRuleTransformer = GRIRuleTransformer.instance();
+
+    Predicate REL = GRIRuleTransformer.REL;
+
+    @BeforeEach
+    public void setUp() {
+    }
+
+    @Test
+    public void RuleSupportExplainerTest4() {
+        Atom query = TestData.pa;
+
+        FactBase factBase = new SimpleInMemoryGraphStore(List.of(TestData.saa, TestData.sab));
+        RuleBase ruleBase = new RuleBaseImpl(List.of(TestData.r6_sxy_px,TestData.r7_sxx_px));
+        KnowledgeBase kb = new KnowledgeBaseImpl(factBase, ruleBase);
+
+        explainer = new RuleSupportExplainer_Baseline(kb);
+        Set<RuleBase> explanations = explainer.getAllExplanations(query);
+
+        RuleBase expectedRuleBase1 = new RuleBaseImpl(Set.of(TestData.r6_sxy_px));
+
+        RuleBase expectedRuleBase2 = new RuleBaseImpl(Set.of(TestData.r7_sxx_px));
+
+        Assertions.assertTrue(explanations.contains(expectedRuleBase1), "(Completeness issue) Explanation missing: " + expectedRuleBase1);
+        Assertions.assertTrue(explanations.contains(expectedRuleBase1), "(Completeness issue) Explanation missing: " + expectedRuleBase1);
+        Assertions.assertEquals(2, explanations.size(), "(Soundness issue) identify non-explanation as explanation");
+    }
+
+    @Test
+    public void RuleSupportExplainerTest3() {
+        Atom query = TestData.qa;
+
+        FactBase factBase = new SimpleInMemoryGraphStore(List.of(TestData.saa, TestData.sbc, TestData.tab));
+        RuleBase ruleBase = new RuleBaseImpl(List.of(TestData.r6_sxy_px, TestData.r7_sxx_px, TestData.r8_pxpytxy_qx));
+        KnowledgeBase kb = new KnowledgeBaseImpl(factBase, ruleBase);
+
+        explainer = new RuleSupportExplainer_Baseline(kb);
+        Set<RuleBase> explanations = explainer.getAllExplanations(query);
+
+        RuleBase expectedRuleBase = new RuleBaseImpl(Set.of(TestData.r6_sxy_px,TestData.r8_pxpytxy_qx));
+
+        Assertions.assertTrue(explanations.contains(expectedRuleBase), "(Completeness issue) Explanation missing: " + expectedRuleBase);
+        Assertions.assertEquals(1, explanations.size(), "(Soundness issue) identify non-explanation as explanation");
+
+    }
+
+    @Test
+    public void RuleSupportExplainerTest2() {
+        Atom query = TestData.qa;
+
+        FactBase factBase = new SimpleInMemoryGraphStore(List.of(TestData.saa, TestData.sbc, TestData.tab));
+        RuleBase ruleBase = new RuleBaseImpl(List.of(TestData.r6_sxy_px, TestData.r7_sxx_px, TestData.r8_pxpytxy_qx));
+        KnowledgeBase kb = new KnowledgeBaseImpl(factBase, ruleBase);
+
+        explainer = new RuleSupportExplainer_Baseline(kb);
+        Set<RuleBase> explanations = explainer.getAllExplanations(query);
+
+        RuleBase expectedRuleBase = new RuleBaseImpl(Set.of(TestData.r6_sxy_px,TestData.r8_pxpytxy_qx));
+
+        Assertions.assertTrue(explanations.contains(expectedRuleBase), "(Completeness issue) Explanation missing: " + expectedRuleBase);
+        Assertions.assertEquals(1, explanations.size(), "(Soundness issue) identify non-explanation as explanation");
+
+    }
+
+    @Test
+    public void RuleSupportExplainerTest1() {
+        Atom query = TestData.qa;
+
+        FactBase factBase = new SimpleInMemoryGraphStore(List.of(TestData.pa, TestData.ta));
+        RuleBase ruleBase = new RuleBaseImpl(List.of(TestData.r1_px_qx, TestData.r4_qx_txy));
+        KnowledgeBase kb = new KnowledgeBaseImpl(factBase, ruleBase);
+
+        explainer = new RuleSupportExplainer_Baseline(kb);
+        Set<RuleBase> explanations = explainer.getAllExplanations(query);
+
+        RuleBase expectedRuleBase = new RuleBaseImpl(Set.of(TestData.r1_px_qx));
+
+
+
+        Assertions.assertTrue(explanations.contains(expectedRuleBase), "(Completeness issue) Explanation missing: " + expectedRuleBase);
+        Assertions.assertEquals(1, explanations.size(), "(Soundness issue) identify non-explanation as explanation");
+
+    }
+
+    @Test
+    public void QueryNotEntailedTest() {
+        Atom query = TestData.sa;
+
+        FactBase factBase = new SimpleInMemoryGraphStore(List.of(TestData.pa, TestData.ta));
+        RuleBase ruleBase = new RuleBaseImpl(List.of(TestData.r1_px_qx, TestData.r4_qx_txy));
+        KnowledgeBase kb = new KnowledgeBaseImpl(factBase, ruleBase);
+
+        explainer = new RuleSupportExplainer_Baseline(kb);
+        Set<RuleBase> explanations = explainer.getAllExplanations(query);
+
+        Assertions.assertEquals(0, explanations.size(), "(Soundness issue) identify non-explanation as explanation");
+
+    }
+
+    @Test
+    public void QueryInFactBaseTest() {
+        Atom query = TestData.pa;
+
+        FactBase factBase = new SimpleInMemoryGraphStore(List.of(TestData.pa, TestData.ta));
+        RuleBase ruleBase = new RuleBaseImpl(List.of(TestData.r1_px_qx, TestData.r4_qx_txy));
+        KnowledgeBase kb = new KnowledgeBaseImpl(factBase, ruleBase);
+
+        explainer = new RuleSupportExplainer_Baseline(kb);
+        Set<RuleBase> explanations = explainer.getAllExplanations(query);
+
+        RuleBase expectedRuleBase = new RuleBaseImpl(Set.of());
+
+        Assertions.assertTrue(explanations.contains(expectedRuleBase), "(Completeness issue) Explanation missing: " + expectedRuleBase);
+        Assertions.assertEquals(1, explanations.size(), "(Soundness issue) identify non-explanation as explanation");
+
+    }
+
+
+    @Test
+    public void RuleSupportExplainerTestCyclic3() {
+        Atom query = TestData.ta;
+
+        FactBase factBase = new SimpleInMemoryGraphStore(List.of(TestData.pa));
+        RuleBase ruleBase = new RuleBaseImpl(List.of(TestData.r1_px_qx,TestData.r10_qx_tx, TestData.r11_tx_px));
+        KnowledgeBase kb = new KnowledgeBaseImpl(factBase, ruleBase);
+
+        explainer = new RuleSupportExplainer_Baseline(kb);
+        Set<RuleBase> explanations = explainer.getAllExplanations(query);
+
+        RuleBase expectedRuleBase1 = new RuleBaseImpl(Set.of(TestData.r1_px_qx, TestData.r10_qx_tx));
+
+        Assertions.assertTrue(explanations.contains(expectedRuleBase1), "(Completeness issue) Explanation missing: " + expectedRuleBase1);
+        Assertions.assertEquals(1, explanations.size(), "(Soundness issue) identify non-explanation as explanation");
+    }
+
+
+    @Test
+    public void RuleSupportExplainerTestCyclic2() {
+        Atom query = TestData.qa;
+
+        FactBase factBase = new SimpleInMemoryGraphStore(List.of(TestData.pa));
+        RuleBase ruleBase = new RuleBaseImpl(List.of(TestData.r1_px_qx,TestData.r10_qx_tx, TestData.r11_tx_px));
+        KnowledgeBase kb = new KnowledgeBaseImpl(factBase, ruleBase);
+
+        explainer = new RuleSupportExplainer_Baseline(kb);
+        Set<RuleBase> explanations = explainer.getAllExplanations(query);
+
+        RuleBase expectedRuleBase1 = new RuleBaseImpl(Set.of(TestData.r1_px_qx));
+
+        Assertions.assertTrue(explanations.contains(expectedRuleBase1), "(Completeness issue) Explanation missing: " + expectedRuleBase1);
+        Assertions.assertEquals(1, explanations.size(), "(Soundness issue) identify non-explanation as explanation");
+    }
+
+
+    @Test
+    public void RuleSupportExplainerTestCyclic1() {
+        Atom query = TestData.qa;
+
+        FactBase factBase = new SimpleInMemoryGraphStore(List.of(TestData.pa));
+        RuleBase ruleBase = new RuleBaseImpl(List.of(TestData.r1_px_qx,TestData.r9_qx_px));
+        KnowledgeBase kb = new KnowledgeBaseImpl(factBase, ruleBase);
+
+        explainer = new RuleSupportExplainer_Baseline(kb);
+        Set<RuleBase> explanations = explainer.getAllExplanations(query);
+
+        RuleBase expectedRuleBase1 = new RuleBaseImpl(Set.of(TestData.r1_px_qx));
+
+        Assertions.assertTrue(explanations.contains(expectedRuleBase1), "(Completeness issue) Explanation missing: " + expectedRuleBase1);
+        Assertions.assertEquals(1, explanations.size(), "(Soundness issue) identify non-explanation as explanation");
+    }
+
+}

integraal/integraal-explanation/src/test/resources/ruleml24/warmup/warmup_kb.dlgp

+p(a).
+q(X):-p(X).
+r(X):-q(X).
\ No newline at end of file

integraal/integraal-explanation/src/test/resources/ruleml24/warmup/warmup_queries.dlgp

+q(a).
\ No newline at end of file

integraal/integraal-forward-chaining/src/main/java/fr/boreal/forward_chaining/chase/ChaseBuilder.java

@@ -674,7 +674,7 @@ public class ChaseBuilder {
                     break;
                 case InteGraalKeywords.CHECKER:
                     switch ((InteGraalKeywords.Algorithms.Parameters.Chase.Checker) param.value()) {
-                        case OBLIVIOUS -> this.useGRDRuleScheduler();
+                        case OBLIVIOUS -> this.useObliviousChecker();
                         case SEMI_OBLIVIOUS -> this.useSemiObliviousChecker();
                         case RESTRICTED -> this.useRestrictedChecker();
                         case SO_RESTRICTED -> this.useSORestrictedChecker();

integraal/integraal-forward-chaining/src/test/java/fr/boreal/forward_chaining/chase/test/treatment/ChasePerformance.java

@@ -2,6 +2,7 @@ package fr.boreal.forward_chaining.chase.test.treatment;
 
 import fr.boreal.forward_chaining.chase.ChaseBuilder;
 import fr.boreal.io.api.ParseException;
+import fr.boreal.io.csv.CSVLoader;
 import fr.boreal.io.dlgp.DlgpParser;
 import fr.boreal.model.kb.api.FactBase;
 import fr.boreal.model.kb.api.KnowledgeBase;
@@ -9,7 +10,12 @@ import fr.boreal.model.kb.api.RuleBase;
 import fr.boreal.model.kb.impl.KnowledgeBaseImpl;
 import fr.boreal.model.kb.impl.RuleBaseImpl;
 import fr.boreal.model.logicalElements.api.Atom;
+import fr.boreal.model.logicalElements.impl.SubstitutionImpl;
+import fr.boreal.model.query.api.FOQuery;
+import fr.boreal.model.query.api.Query;
 import fr.boreal.model.rule.api.FORule;
+import fr.boreal.query_evaluation.generic.DefaultGenericQueryEvaluator;
+import fr.boreal.query_evaluation.generic.GenericFOQueryEvaluator;
 import fr.boreal.storage.natives.SimpleInMemoryGraphStore;
 import org.junit.Test;
 
@@ -22,6 +28,9 @@ public class ChasePerformance {
 
     String a10 = "src/test/resources/knowledge_bases/andersen_10000.dlgp";
     String a50 = "src/test/resources/knowledge_bases/andersen_50000.dlgp";
+    String lubm = "src/test/resources/knowledge_bases/lubm-001/lubm-data-import-integraal.rls";
+    String lubm_rules = "src/test/resources/knowledge_bases/lubm-001/rules/lubm-rules.dlgp";
+    String lubm_query = "src/test/resources/knowledge_bases/lubm-001/queries/allQueries.dlgp";
 
 
     @Test
@@ -30,12 +39,12 @@ public class ChasePerformance {
         /*
         Anderser 10
          */
-        
+
         long begin = System.currentTimeMillis();
         var res = parseKB(new File(a10));
         long end = System.currentTimeMillis();
         System.out.println("loading time "+ (end - begin));
-        
+
         var fb= res.getFactBase();
         var rb= res.getRuleBase();
         var c = ChaseBuilder.defaultBuilder(fb, rb)
@@ -53,6 +62,45 @@ public class ChasePerformance {
     }
 
 
+    @Test
+    public void testChaseTimeFromCSV() throws FileNotFoundException {
+
+        FactBase fb = new SimpleInMemoryGraphStore();
+        
+        long begin = System.currentTimeMillis();
+        CSVLoader.parseAndLoad(fb,new File(lubm),false);
+        long end = System.currentTimeMillis();
+        System.out.println("loading time from CSV "+ (end - begin));
+
+        var rb= new RuleBaseImpl(DlgpParser.parseFile(lubm_rules).rules());
+        
+        var c = ChaseBuilder.defaultBuilder(fb, rb)
+                .useObliviousChecker()
+                .useNaiveComputer()
+                .useByPredicateRuleScheduler()
+                .useBreadthFirstApplier()
+                .build().get();
+
+        System.out.println("pre: #atoms "  + fb.size());
+        begin = System.currentTimeMillis();
+        c.execute();
+        end = System.currentTimeMillis();
+        System.out.println("saturation time (ms): " + (end - begin));
+        System.out.println("post: #atoms " + fb.size());
+
+        var queries = DlgpParser.parseFile(lubm_query).queries();
+        for(Query q : queries) {
+            System.out.println(q);
+            var res = DefaultGenericQueryEvaluator.defaultInstance().evaluate(q,fb,q.getAnswerVariables(),new SubstitutionImpl());
+            int count =0;
+            while(res.hasNext()){
+                count++;
+                res.next();
+            }
+            System.out.println("number of answers : "+count);
+        }
+
+    }
     public static KnowledgeBase parseKB(File dlgpFile) throws FileNotFoundException {
 
         FactBase fb = new SimpleInMemoryGraphStore();

integraal/integraal-forward-chaining/src/test/resources/knowledge_bases/lubm-001/data/src_AssistantProfessor.csv

+department0-university0-assistantprofessor0
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integraal/integraal-forward-chaining/src/test/resources/knowledge_bases/lubm-001/data/src_AssociateProfessor.csv

+department0-university0-associateprofessor0
+department0-university0-associateprofessor1
+department0-university0-associateprofessor2
+department0-university0-associateprofessor3
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